Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4185

Experiment: Glycine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_4184 and Shewana3_4185 are separated by 152 nucleotidesShewana3_4185 and Shewana3_4186 are separated by 2 nucleotidesShewana3_4186 and Shewana3_4187 are separated by 104 nucleotides Shewana3_4184: Shewana3_4184 - IS605 family transposase OrfB (RefSeq), at 49,642 to 50,745 _4184 Shewana3_4185: Shewana3_4185 - hypothetical protein (RefSeq), at 50,898 to 51,413 _4185 Shewana3_4186: Shewana3_4186 - membrane-bound metal-dependent hydrolase (RefSeq), at 51,416 to 51,769 _4186 Shewana3_4187: Shewana3_4187 - hypothetical protein (RefSeq), at 51,874 to 52,488 _4187 Position (kb) 50 51 52Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 50.708 kb on - strandat 50.966 kb on + strand, within Shewana3_4185at 51.181 kb on + strand, within Shewana3_4185at 51.286 kb on - strand, within Shewana3_4185at 51.406 kb on - strandat 51.489 kb on + strand, within Shewana3_4186at 51.545 kb on - strand, within Shewana3_4186at 51.633 kb on + strand, within Shewana3_4186at 51.855 kb on - strandat 52.172 kb on - strand, within Shewana3_4187at 52.304 kb on - strand, within Shewana3_4187at 52.306 kb on + strand, within Shewana3_4187

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
remove
50,708 - +0.5
50,966 + Shewana3_4185 0.13 -1.9
51,181 + Shewana3_4185 0.55 +4.3
51,286 - Shewana3_4185 0.75 +0.7
51,406 - +0.7
51,489 + Shewana3_4186 0.21 +0.4
51,545 - Shewana3_4186 0.36 +0.4
51,633 + Shewana3_4186 0.61 +0.3
51,855 - +0.4
52,172 - Shewana3_4187 0.48 +0.2
52,304 - Shewana3_4187 0.70 -1.2
52,306 + Shewana3_4187 0.70 -1.3

Or see this region's nucleotide sequence