Experiment: Glycine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4165 and Shewana3_4166 are separated by 29 nucleotides Shewana3_4166 and Shewana3_4167 are separated by 94 nucleotides Shewana3_4167 and Shewana3_4168 are separated by 343 nucleotides
Shewana3_4165: Shewana3_4165 - hypothetical protein (RefSeq), at 30,965 to 31,375
_4165
Shewana3_4166: Shewana3_4166 - hypothetical protein (RefSeq), at 31,405 to 32,007
_4166
Shewana3_4167: Shewana3_4167 - DNA replication terminus site-binding protein (RefSeq), at 32,102 to 32,974
_4167
Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007
_4168
Position (kb)
32
33 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 31.205 kb on + strand, within Shewana3_4165 at 31.369 kb on - strand at 31.646 kb on + strand, within Shewana3_4166 at 31.654 kb on - strand, within Shewana3_4166 at 31.725 kb on + strand, within Shewana3_4166 at 31.730 kb on + strand, within Shewana3_4166 at 31.779 kb on - strand, within Shewana3_4166 at 31.795 kb on + strand, within Shewana3_4166 at 31.875 kb on + strand, within Shewana3_4166 at 31.875 kb on + strand, within Shewana3_4166 at 31.942 kb on + strand, within Shewana3_4166 at 31.957 kb on + strand at 31.957 kb on + strand at 31.957 kb on + strand at 31.965 kb on - strand at 31.965 kb on - strand at 31.977 kb on - strand at 31.979 kb on + strand at 31.979 kb on + strand at 31.979 kb on + strand at 31.987 kb on - strand at 31.987 kb on - strand at 31.987 kb on - strand at 31.987 kb on - strand at 32.033 kb on + strand at 32.053 kb on - strand at 32.053 kb on - strand at 32.053 kb on - strand at 32.108 kb on - strand at 32.285 kb on - strand, within Shewana3_4167 at 32.337 kb on + strand, within Shewana3_4167 at 32.597 kb on - strand, within Shewana3_4167 at 32.693 kb on - strand, within Shewana3_4167 at 32.863 kb on + strand, within Shewana3_4167 at 32.879 kb on + strand, within Shewana3_4167 at 33.053 kb on + strand at 33.075 kb on - strand at 33.075 kb on - strand at 33.111 kb on + strand at 33.119 kb on - strand at 33.250 kb on + strand at 33.281 kb on - strand at 33.525 kb on - strand, within Shewana3_4168 at 33.566 kb on + strand, within Shewana3_4168 at 33.726 kb on + strand, within Shewana3_4168 at 33.734 kb on - strand, within Shewana3_4168 at 33.793 kb on - strand, within Shewana3_4168 at 33.819 kb on + strand, within Shewana3_4168
Per-strain Table
Position Strand Gene LocusTag Fraction Glycine (N) remove 31,205 + Shewana3_4165 0.58 -1.9 31,369 - -1.0 31,646 + Shewana3_4166 0.40 -1.3 31,654 - Shewana3_4166 0.41 +0.7 31,725 + Shewana3_4166 0.53 -0.2 31,730 + Shewana3_4166 0.54 -0.2 31,779 - Shewana3_4166 0.62 -0.3 31,795 + Shewana3_4166 0.65 -0.9 31,875 + Shewana3_4166 0.78 -0.6 31,875 + Shewana3_4166 0.78 -0.4 31,942 + Shewana3_4166 0.89 +1.0 31,957 + +0.3 31,957 + -0.4 31,957 + -0.6 31,965 - -2.0 31,965 - -0.4 31,977 - +0.2 31,979 + +0.4 31,979 + -3.2 31,979 + +1.2 31,987 - +0.2 31,987 - -1.4 31,987 - +0.9 31,987 - -1.1 32,033 + +0.3 32,053 - -0.1 32,053 - +2.8 32,053 - +0.9 32,108 - -0.6 32,285 - Shewana3_4167 0.21 +1.0 32,337 + Shewana3_4167 0.27 +1.3 32,597 - Shewana3_4167 0.57 +0.6 32,693 - Shewana3_4167 0.68 +0.4 32,863 + Shewana3_4167 0.87 +0.4 32,879 + Shewana3_4167 0.89 -0.5 33,053 + +0.0 33,075 - -1.8 33,075 - +1.2 33,111 + +0.5 33,119 - +0.8 33,250 + -0.9 33,281 - +0.3 33,525 - Shewana3_4168 0.30 -0.5 33,566 + Shewana3_4168 0.36 -1.3 33,726 + Shewana3_4168 0.59 -3.1 33,734 - Shewana3_4168 0.60 +0.3 33,793 - Shewana3_4168 0.69 +0.6 33,819 + Shewana3_4168 0.73 +0.8
Or see this region's nucleotide sequence