Strain Fitness in Shewanella sp. ANA-3 around Shewana3_4167

Experiment: Glycine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_4165 and Shewana3_4166 are separated by 29 nucleotidesShewana3_4166 and Shewana3_4167 are separated by 94 nucleotidesShewana3_4167 and Shewana3_4168 are separated by 343 nucleotides Shewana3_4165: Shewana3_4165 - hypothetical protein (RefSeq), at 30,965 to 31,375 _4165 Shewana3_4166: Shewana3_4166 - hypothetical protein (RefSeq), at 31,405 to 32,007 _4166 Shewana3_4167: Shewana3_4167 - DNA replication terminus site-binding protein (RefSeq), at 32,102 to 32,974 _4167 Shewana3_4168: Shewana3_4168 - hypothetical protein (RefSeq), at 33,318 to 34,007 _4168 Position (kb) 32 33Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 31.205 kb on + strand, within Shewana3_4165at 31.369 kb on - strandat 31.646 kb on + strand, within Shewana3_4166at 31.654 kb on - strand, within Shewana3_4166at 31.725 kb on + strand, within Shewana3_4166at 31.730 kb on + strand, within Shewana3_4166at 31.779 kb on - strand, within Shewana3_4166at 31.795 kb on + strand, within Shewana3_4166at 31.875 kb on + strand, within Shewana3_4166at 31.875 kb on + strand, within Shewana3_4166at 31.942 kb on + strand, within Shewana3_4166at 31.957 kb on + strandat 31.957 kb on + strandat 31.957 kb on + strandat 31.965 kb on - strandat 31.965 kb on - strandat 31.977 kb on - strandat 31.979 kb on + strandat 31.979 kb on + strandat 31.979 kb on + strandat 31.987 kb on - strandat 31.987 kb on - strandat 31.987 kb on - strandat 31.987 kb on - strandat 32.033 kb on + strandat 32.053 kb on - strandat 32.053 kb on - strandat 32.053 kb on - strandat 32.108 kb on - strandat 32.285 kb on - strand, within Shewana3_4167at 32.337 kb on + strand, within Shewana3_4167at 32.597 kb on - strand, within Shewana3_4167at 32.693 kb on - strand, within Shewana3_4167at 32.863 kb on + strand, within Shewana3_4167at 32.879 kb on + strand, within Shewana3_4167at 33.053 kb on + strandat 33.075 kb on - strandat 33.075 kb on - strandat 33.111 kb on + strandat 33.119 kb on - strandat 33.250 kb on + strandat 33.281 kb on - strandat 33.525 kb on - strand, within Shewana3_4168at 33.566 kb on + strand, within Shewana3_4168at 33.726 kb on + strand, within Shewana3_4168at 33.734 kb on - strand, within Shewana3_4168at 33.793 kb on - strand, within Shewana3_4168at 33.819 kb on + strand, within Shewana3_4168

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycine (N)
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31,205 + Shewana3_4165 0.58 -1.9
31,369 - -1.0
31,646 + Shewana3_4166 0.40 -1.3
31,654 - Shewana3_4166 0.41 +0.7
31,725 + Shewana3_4166 0.53 -0.2
31,730 + Shewana3_4166 0.54 -0.2
31,779 - Shewana3_4166 0.62 -0.3
31,795 + Shewana3_4166 0.65 -0.9
31,875 + Shewana3_4166 0.78 -0.6
31,875 + Shewana3_4166 0.78 -0.4
31,942 + Shewana3_4166 0.89 +1.0
31,957 + +0.3
31,957 + -0.4
31,957 + -0.6
31,965 - -2.0
31,965 - -0.4
31,977 - +0.2
31,979 + +0.4
31,979 + -3.2
31,979 + +1.2
31,987 - +0.2
31,987 - -1.4
31,987 - +0.9
31,987 - -1.1
32,033 + +0.3
32,053 - -0.1
32,053 - +2.8
32,053 - +0.9
32,108 - -0.6
32,285 - Shewana3_4167 0.21 +1.0
32,337 + Shewana3_4167 0.27 +1.3
32,597 - Shewana3_4167 0.57 +0.6
32,693 - Shewana3_4167 0.68 +0.4
32,863 + Shewana3_4167 0.87 +0.4
32,879 + Shewana3_4167 0.89 -0.5
33,053 + +0.0
33,075 - -1.8
33,075 - +1.2
33,111 + +0.5
33,119 - +0.8
33,250 + -0.9
33,281 - +0.3
33,525 - Shewana3_4168 0.30 -0.5
33,566 + Shewana3_4168 0.36 -1.3
33,726 + Shewana3_4168 0.59 -3.1
33,734 - Shewana3_4168 0.60 +0.3
33,793 - Shewana3_4168 0.69 +0.6
33,819 + Shewana3_4168 0.73 +0.8

Or see this region's nucleotide sequence