Strain Fitness in Shewanella loihica PV-4 around Shew_3109

Experiment: casaminos (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos (C)
3,689,571	+		Shew_3108	0.45	-0.2
3,689,578	-		Shew_3108	0.47	-0.5
3,689,579	-		Shew_3108	0.47	+0.4
3,689,579	-		Shew_3108	0.47	-2.7
3,689,596	+		Shew_3108	0.50	+0.5
3,689,596	+		Shew_3108	0.50	+0.8
3,689,599	-		Shew_3108	0.50	-0.5
3,689,625	+		Shew_3108	0.55	+0.5
3,689,638	+		Shew_3108	0.57	-0.0
3,689,658	+		Shew_3108	0.61	+0.2
3,689,658	+		Shew_3108	0.61	+0.5
3,689,666	+		Shew_3108	0.62	+0.1
3,689,667	-		Shew_3108	0.63	+0.7
3,689,681	+		Shew_3108	0.65	+0.3
3,689,686	-		Shew_3108	0.66	+0.1
3,689,695	+		Shew_3108	0.68	-0.2
3,689,701	+		Shew_3108	0.69	+1.0
3,689,706	+		Shew_3108	0.70	+0.5
3,689,706	+		Shew_3108	0.70	+0.8
3,689,706	+		Shew_3108	0.70	+0.2
3,689,706	+		Shew_3108	0.70	+0.1
3,689,709	-		Shew_3108	0.70	+0.3
3,689,714	-		Shew_3108	0.71	+0.2
3,689,714	-		Shew_3108	0.71	-0.4
3,689,714	-		Shew_3108	0.71	+0.4
3,689,746	-		Shew_3108	0.77	+0.8
3,689,746	-		Shew_3108	0.77	+0.6
3,689,756	-		Shew_3108	0.78	-0.2
3,689,758	+		Shew_3108	0.79	-0.6
3,689,758	+		Shew_3108	0.79	+0.1
3,689,758	+		Shew_3108	0.79	+0.5
3,689,758	+		Shew_3108	0.79	-0.8
3,689,758	+		Shew_3108	0.79	+0.1
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	-2.2
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	-0.1
3,689,758	+		Shew_3108	0.79	+2.4
3,689,758	+		Shew_3108	0.79	+0.7
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	+0.6
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	-1.7
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	+0.5
3,689,758	+		Shew_3108	0.79	-0.2
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	-1.2
3,689,758	+		Shew_3108	0.79	-1.8
3,689,758	+		Shew_3108	0.79	+0.0
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	-0.5
3,689,758	+		Shew_3108	0.79	-0.5
3,689,758	+		Shew_3108	0.79	-0.1
3,689,758	+		Shew_3108	0.79	+0.0
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	-0.1
3,689,758	+		Shew_3108	0.79	+0.2
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	-0.1
3,689,758	+		Shew_3108	0.79	+0.3
3,689,758	+		Shew_3108	0.79	-0.9
3,689,758	+		Shew_3108	0.79	-2.8
3,689,758	+		Shew_3108	0.79	-0.1
3,689,758	+		Shew_3108	0.79	-0.4
3,689,758	+		Shew_3108	0.79	+0.9
3,689,758	+		Shew_3108	0.79	-0.2
3,689,758	+		Shew_3108	0.79	-0.3
3,689,758	+		Shew_3108	0.79	+0.7
3,689,758	+		Shew_3108	0.79	-0.6
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	-4.7
3,689,758	+		Shew_3108	0.79	+0.4
3,689,758	+		Shew_3108	0.79	-0.1
3,689,758	+		Shew_3108	0.79	+0.7
3,689,766	-		Shew_3108	0.80	-0.0
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	-0.8
3,689,766	-		Shew_3108	0.80	+1.2
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	+0.0
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	-0.7
3,689,766	-		Shew_3108	0.80	+0.2
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	+0.1
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	-0.1
3,689,766	-		Shew_3108	0.80	-0.2
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	+0.2
3,689,766	-		Shew_3108	0.80	+0.1
3,689,766	-		Shew_3108	0.80	+0.7
3,689,766	-		Shew_3108	0.80	-0.6
3,689,766	-		Shew_3108	0.80	+0.8
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	-1.5
3,689,766	-		Shew_3108	0.80	+0.5
3,689,766	-		Shew_3108	0.80	-0.2
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	+0.6
3,689,766	-		Shew_3108	0.80	+0.8
3,689,766	-		Shew_3108	0.80	-0.5
3,689,766	-		Shew_3108	0.80	-0.0
3,689,766	-		Shew_3108	0.80	-0.3
3,689,766	-		Shew_3108	0.80	+0.7
3,689,766	-		Shew_3108	0.80	+0.5
3,689,766	-		Shew_3108	0.80	+0.2
3,689,766	-		Shew_3108	0.80	+0.7
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	+0.3
3,689,766	-		Shew_3108	0.80	-0.1
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	+0.0
3,689,766	-		Shew_3108	0.80	-0.1
3,689,766	-		Shew_3108	0.80	-1.0
3,689,766	-		Shew_3108	0.80	+0.4
3,689,766	-		Shew_3108	0.80	+0.2
3,689,787	+		Shew_3108	0.84	+0.6
3,689,795	+		Shew_3108	0.85	+0.2
3,689,795	+		Shew_3108	0.85	-0.2
3,689,795	+		Shew_3108	0.85	+1.8
3,689,795	+		Shew_3108	0.85	+0.5
3,689,795	+		Shew_3108	0.85	+0.5
3,689,795	+		Shew_3108	0.85	+0.6
3,689,795	+		Shew_3108	0.85	+0.4
3,689,795	+		Shew_3108	0.85	-0.1
3,689,795	+		Shew_3108	0.85	+1.6
3,689,795	+		Shew_3108	0.85	+0.7
3,689,795	+		Shew_3108	0.85	+0.6
3,689,795	+		Shew_3108	0.85	-0.9
3,689,795	+		Shew_3108	0.85	-0.0
3,689,795	+		Shew_3108	0.85	+0.4
3,689,797	+		Shew_3108	0.86	+0.4
3,689,803	-		Shew_3108	0.87	+0.0
3,689,803	-		Shew_3108	0.87	+0.1
3,689,803	+		Shew_3108	0.87	+0.5
3,689,803	-		Shew_3108	0.87	-0.6
3,689,803	-		Shew_3108	0.87	+0.2
3,689,803	-		Shew_3108	0.87	+0.1
3,689,803	-		Shew_3108	0.87	-1.2
3,689,803	-		Shew_3108	0.87	-0.6
3,689,803	-		Shew_3108	0.87	-0.8
3,689,803	-		Shew_3108	0.87	-0.1
3,689,803	-		Shew_3108	0.87	+1.0
3,689,803	-		Shew_3108	0.87	-0.4
3,689,803	-		Shew_3108	0.87	+0.5
3,689,813	-		Shew_3108	0.89	+0.8
3,689,874	+				+0.5
3,689,874	+				-0.8
3,689,889	+				+0.5
3,689,889	+				-0.3
3,689,892	+				+0.3
3,689,897	-				+0.2
3,689,897	-				+0.6
3,689,897	-				+0.2
3,689,899	+				+1.6
3,689,899	+				-0.1
3,689,899	+				+0.4
3,689,907	-				+0.5
3,689,907	-				+0.3
3,689,918	+				+0.6
3,689,925	-				+0.7
3,689,927	+				+0.5
3,689,927	+				-0.2
3,689,927	+				+0.5
3,689,927	+				-0.1
3,689,927	+				+0.4
3,689,933	+				+0.3
3,689,935	-				-0.2
3,689,935	-				+0.7
3,689,935	-				-0.1
3,690,033	-				+0.2
3,690,034	+				+0.5
3,690,047	+				+0.3
3,690,047	+				+0.3
3,690,055	+				-0.2
3,690,055	+				-0.2
3,690,063	-				+0.0
3,690,063	-				-0.1
3,690,063	-				+1.2
3,690,063	-				+0.2
3,690,078	-				+0.7
3,690,158	+				+0.6
3,690,178	-				+0.4
3,690,201	-				+0.0
3,690,280	-				+0.6
3,690,287	+				+0.1
3,690,362	+				-0.4
3,690,363	+				-0.2
3,690,571	-		Shew_3109	0.14	-0.4
3,690,598	+		Shew_3109	0.18	+0.4
3,690,647	-		Shew_3109	0.23	-0.0
3,690,675	-		Shew_3109	0.26	+0.3
3,690,718	-		Shew_3109	0.31	+0.3
3,690,751	+		Shew_3109	0.35	-0.1
3,690,942	-		Shew_3109	0.57	-0.0
3,691,093	+		Shew_3109	0.74	-0.1
3,691,101	-		Shew_3109	0.75	+0.0
3,691,267	-				+0.3
3,691,441	-				-0.5
3,691,480	+				+0.8
3,691,481	+				+1.0
3,691,481	+				-0.5
3,691,481	+				+0.1
3,691,481	+				+1.2
3,691,489	-				-2.5
3,691,489	-				+1.1
3,691,489	-				+0.8
3,691,512	+				-0.4
3,691,611	-				+0.6
3,691,627	+				+0.4
3,691,627	+				+0.2
3,691,627	+				+0.7
3,691,627	+				+0.4
3,691,635	-				+0.8
3,691,685	+		Shew_3110	0.12	+0.4
3,691,693	-		Shew_3110	0.16	+0.3
3,691,693	-		Shew_3110	0.16	+0.7
3,691,693	-		Shew_3110	0.16	+0.2
3,691,693	-		Shew_3110	0.16	+0.5
3,691,785	-		Shew_3110	0.60	+0.5
3,691,831	+		Shew_3110	0.82	+1.7
3,691,842	+		Shew_3110	0.87	-1.2
3,691,857	+				+1.4
3,691,872	+				+1.7
3,691,872	+				+0.2
3,691,872	+				+0.4
3,691,872	+				+0.0
3,691,880	-				+1.1
3,691,880	-				+0.5
3,691,943	-				+0.1
3,691,951	-				+0.1
3,692,039	-				+0.1
3,692,095	-		Shew_3111	0.14	+0.3
3,692,145	+		Shew_3111	0.20	+1.0
3,692,153	-		Shew_3111	0.21	+1.7