Strain Fitness in Shewanella loihica PV-4 around Shew_2950

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2948 and Shew_2949 are separated by 114 nucleotidesShew_2949 and Shew_2950 overlap by 1 nucleotidesShew_2950 and Shew_2951 are separated by 123 nucleotides Shew_2948: Shew_2948 - ATPase (RefSeq), at 3,492,164 to 3,494,737 _2948 Shew_2949: Shew_2949 - hypothetical protein (RefSeq), at 3,494,852 to 3,495,571 _2949 Shew_2950: Shew_2950 - RluA family pseudouridine synthase (RefSeq), at 3,495,571 to 3,496,542 _2950 Shew_2951: Shew_2951 - putative lipoprotein (RefSeq), at 3,496,666 to 3,497,424 _2951 Position (kb) 3495 3496 3497Strain fitness (log2 ratio) -3 -2 -1 0 1at 3494.734 kb on + strandat 3495.189 kb on + strand, within Shew_2949at 3495.324 kb on + strand, within Shew_2949at 3495.358 kb on + strand, within Shew_2949at 3495.413 kb on - strand, within Shew_2949at 3495.725 kb on - strand, within Shew_2950at 3496.412 kb on + strand, within Shew_2950at 3496.479 kb on + strandat 3496.513 kb on - strandat 3497.450 kb on + strandat 3497.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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3,494,734 + -0.3
3,495,189 + Shew_2949 0.47 +0.0
3,495,324 + Shew_2949 0.66 +0.1
3,495,358 + Shew_2949 0.70 +0.1
3,495,413 - Shew_2949 0.78 +0.2
3,495,725 - Shew_2950 0.16 -2.1
3,496,412 + Shew_2950 0.87 -0.7
3,496,479 + -2.8
3,496,513 - -2.8
3,497,450 + +0.9
3,497,487 - +0.2

Or see this region's nucleotide sequence