Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2466 and Shew_2467 are separated by 125 nucleotides Shew_2467 and Shew_2468 are separated by 32 nucleotides Shew_2468 and Shew_2469 are separated by 48 nucleotides Shew_2469 and Shew_2470 are separated by 4 nucleotides Shew_2470 and Shew_2471 are separated by 91 nucleotides
Shew_2466: Shew_2466 - hypothetical protein (RefSeq), at 2,902,171 to 2,904,141
_2466
Shew_2467: Shew_2467 - hypothetical protein (RefSeq), at 2,904,267 to 2,904,653
_2467
Shew_2468: Shew_2468 - RNA-binding S4 domain-containing protein (RefSeq), at 2,904,686 to 2,904,916
_2468
Shew_2469: Shew_2469 - GCN5-related N-acetyltransferase (RefSeq), at 2,904,965 to 2,905,513
_2469
Shew_2470: Shew_2470 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 2,905,518 to 2,905,796
_2470
Shew_2471: Shew_2471 - hypothetical protein (RefSeq), at 2,905,888 to 2,907,723
_2471
Position (kb) 2904
2905
2906 Strain fitness (log2 ratio) -1
0
1 at 2904.157 kb on - strand at 2905.140 kb on + strand, within Shew_2469 at 2905.580 kb on - strand, within Shew_2470 at 2905.654 kb on + strand, within Shew_2470 at 2906.226 kb on - strand, within Shew_2471 at 2906.306 kb on + strand, within Shew_2471
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 2,904,157 - -1.0 2,905,140 + Shew_2469 0.32 -0.9 2,905,580 - Shew_2470 0.22 -0.3 2,905,654 + Shew_2470 0.49 -0.0 2,906,226 - Shew_2471 0.18 +0.3 2,906,306 + Shew_2471 0.23 -0.9
Or see this region's nucleotide sequence