Strain Fitness in Shewanella loihica PV-4 around Shew_2130

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2129 and Shew_2130 are separated by 1 nucleotidesShew_2130 and Shew_2131 overlap by 4 nucleotides Shew_2129: Shew_2129 - exodeoxyribonuclease V, gamma subunit (RefSeq), at 2,468,812 to 2,472,390 _2129 Shew_2130: Shew_2130 - exodeoxyribonuclease V, beta subunit (RefSeq), at 2,472,392 to 2,476,063 _2130 Shew_2131: Shew_2131 - exodeoxyribonuclease V, alpha subunit (RefSeq), at 2,476,060 to 2,478,048 _2131 Position (kb) 2472 2473 2474 2475 2476 2477Strain fitness (log2 ratio) -1 0 1at 2475.976 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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2,475,976 + +0.0

Or see this region's nucleotide sequence