Strain Fitness in Shewanella loihica PV-4 around Shew_1439

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1438 and Shew_1439 are separated by 93 nucleotidesShew_1439 and Shew_1440 are separated by 29 nucleotides Shew_1438: Shew_1438 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 1,653,215 to 1,654,201 _1438 Shew_1439: Shew_1439 - maleylacetoacetate isomerase (RefSeq), at 1,654,295 to 1,654,939 _1439 Shew_1440: Shew_1440 - LysR family transcriptional regulator (RefSeq), at 1,654,969 to 1,655,859 _1440 Position (kb) 1654 1655Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1653.736 kb on + strand, within Shew_1438at 1654.177 kb on + strandat 1654.629 kb on + strand, within Shew_1439at 1654.659 kb on + strand, within Shew_1439at 1654.667 kb on - strand, within Shew_1439at 1654.784 kb on - strand, within Shew_1439at 1655.074 kb on - strand, within Shew_1440at 1655.905 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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1,653,736 + Shew_1438 0.53 -5.8
1,654,177 + -4.1
1,654,629 + Shew_1439 0.52 -2.6
1,654,659 + Shew_1439 0.56 -3.7
1,654,667 - Shew_1439 0.58 -5.4
1,654,784 - Shew_1439 0.76 -3.0
1,655,074 - Shew_1440 0.12 -0.3
1,655,905 + +0.3

Or see this region's nucleotide sequence