Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0859 and Shew_0860 are separated by 78 nucleotides Shew_0860 and Shew_0861 are separated by 169 nucleotides Shew_0861 and Shew_0862 are separated by 157 nucleotides
Shew_0859: Shew_0859 - glutathione S-transferase domain-containing protein (RefSeq), at 980,431 to 981,030
_0859
Shew_0860: Shew_0860 - hypothetical protein (RefSeq), at 981,109 to 981,579
_0860
Shew_0861: Shew_0861 - extracellular solute-binding protein (RefSeq), at 981,749 to 982,756
_0861
Shew_0862: Shew_0862 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 982,914 to 984,545
_0862
Position (kb) 981
982
983 Strain fitness (log2 ratio) -1
0
1
2 at 980.758 kb on + strand, within Shew_0859 at 980.815 kb on - strand, within Shew_0859 at 981.125 kb on + strand at 981.393 kb on - strand, within Shew_0860 at 981.393 kb on - strand, within Shew_0860 at 981.925 kb on - strand, within Shew_0861 at 982.047 kb on + strand, within Shew_0861 at 982.060 kb on - strand, within Shew_0861 at 982.131 kb on + strand, within Shew_0861 at 982.131 kb on + strand, within Shew_0861 at 982.435 kb on + strand, within Shew_0861 at 982.443 kb on - strand, within Shew_0861 at 982.674 kb on - strand at 983.106 kb on - strand, within Shew_0862 at 983.431 kb on + strand, within Shew_0862 at 983.431 kb on + strand, within Shew_0862
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 980,758 + Shew_0859 0.55 +0.2 980,815 - Shew_0859 0.64 +1.9 981,125 + +0.1 981,393 - Shew_0860 0.60 +1.6 981,393 - Shew_0860 0.60 +0.5 981,925 - Shew_0861 0.17 -0.2 982,047 + Shew_0861 0.30 -0.7 982,060 - Shew_0861 0.31 -0.4 982,131 + Shew_0861 0.38 -0.5 982,131 + Shew_0861 0.38 -0.5 982,435 + Shew_0861 0.68 -0.7 982,443 - Shew_0861 0.69 -0.8 982,674 - -0.4 983,106 - Shew_0862 0.12 -0.6 983,431 + Shew_0862 0.32 -0.8 983,431 + Shew_0862 0.32 -1.0
Or see this region's nucleotide sequence