Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0781 and Shew_0782 are separated by 220 nucleotides Shew_0782 and Shew_0783 are separated by 134 nucleotides Shew_0783 and Shew_0784 are separated by 93 nucleotides
Shew_0781: Shew_0781 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 892,722 to 896,573
_0781
Shew_0782: Shew_0782 - DNA-binding transcriptional regulator AsnC (RefSeq), at 896,794 to 897,255
_0782
Shew_0783: Shew_0783 - pseudouridylate synthase (RefSeq), at 897,390 to 898,067
_0783
Shew_0784: Shew_0784 - hypothetical protein (RefSeq), at 898,161 to 898,448
_0784
Position (kb) 896
897
898 Strain fitness (log2 ratio) -1
0
1 at 895.804 kb on + strand, within Shew_0781 at 895.853 kb on + strand, within Shew_0781 at 896.086 kb on - strand, within Shew_0781 at 896.151 kb on - strand, within Shew_0781 at 896.168 kb on - strand, within Shew_0781 at 896.219 kb on - strand at 896.504 kb on + strand at 896.800 kb on - strand at 896.973 kb on + strand, within Shew_0782 at 897.066 kb on + strand, within Shew_0782 at 897.073 kb on - strand, within Shew_0782 at 897.398 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 895,804 + Shew_0781 0.80 +0.4 895,853 + Shew_0781 0.81 +0.3 896,086 - Shew_0781 0.87 -0.0 896,151 - Shew_0781 0.89 -0.4 896,168 - Shew_0781 0.89 +0.3 896,219 - +0.4 896,504 + -0.9 896,800 - -0.7 896,973 + Shew_0782 0.39 -0.4 897,066 + Shew_0782 0.59 -0.4 897,073 - Shew_0782 0.60 -1.0 897,398 - +0.4
Or see this region's nucleotide sequence