Strain Fitness in Shewanella loihica PV-4 around Shew_0758

Experiment: casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0756 and Shew_0757 are separated by 246 nucleotidesShew_0757 and Shew_0758 are separated by 188 nucleotidesShew_0758 and Shew_0759 are separated by 11 nucleotides Shew_0756: Shew_0756 - hypothetical protein (RefSeq), at 858,135 to 858,875 _0756 Shew_0757: Shew_0757 - putative transcriptional regulator, CadC (RefSeq), at 859,122 to 859,577 _0757 Shew_0758: Shew_0758 - hypothetical protein (RefSeq), at 859,766 to 860,287 _0758 Shew_0759: Shew_0759 - cytochrome c, putative (RefSeq), at 860,299 to 861,120 _0759 Position (kb) 859 860 861Strain fitness (log2 ratio) -1 0 1at 859.227 kb on + strand, within Shew_0757at 859.396 kb on - strand, within Shew_0757at 859.474 kb on - strand, within Shew_0757at 859.686 kb on - strandat 859.879 kb on - strand, within Shew_0758at 859.879 kb on - strand, within Shew_0758at 859.903 kb on - strand, within Shew_0758at 860.139 kb on - strand, within Shew_0758at 860.161 kb on + strand, within Shew_0758at 860.460 kb on - strand, within Shew_0759at 860.470 kb on - strand, within Shew_0759at 860.705 kb on + strand, within Shew_0759at 861.054 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction casaminos (C)
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859,227 + Shew_0757 0.23 +0.1
859,396 - Shew_0757 0.60 +0.5
859,474 - Shew_0757 0.77 -0.1
859,686 - -1.1
859,879 - Shew_0758 0.22 -0.0
859,879 - Shew_0758 0.22 -0.5
859,903 - Shew_0758 0.26 -0.2
860,139 - Shew_0758 0.71 -1.5
860,161 + Shew_0758 0.76 -0.4
860,460 - Shew_0759 0.20 +0.4
860,470 - Shew_0759 0.21 +0.7
860,705 + Shew_0759 0.49 +0.5
861,054 - +0.0

Or see this region's nucleotide sequence