Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0628 and Shew_0629 are separated by 47 nucleotides Shew_0629 and Shew_0630 are separated by 2 nucleotides Shew_0630 and Shew_0631 are separated by 3 nucleotides
Shew_0628: Shew_0628 - (glutamate--ammonia-ligase) adenylyltransferase (RefSeq), at 713,023 to 715,893
_0628
Shew_0629: Shew_0629 - extracellular solute-binding protein (RefSeq), at 715,941 to 716,714
_0629
Shew_0630: Shew_0630 - hypothetical protein (RefSeq), at 716,717 to 717,529
_0630
Shew_0631: Shew_0631 - AFG1 family ATPase (RefSeq), at 717,533 to 718,699
_0631
Position (kb) 716
717
718 Strain fitness (log2 ratio) -1
0
1 at 715.739 kb on - strand at 715.785 kb on + strand at 715.837 kb on - strand at 716.227 kb on + strand, within Shew_0629 at 716.353 kb on + strand, within Shew_0629 at 716.353 kb on + strand, within Shew_0629 at 716.353 kb on + strand, within Shew_0629 at 716.361 kb on - strand, within Shew_0629 at 716.361 kb on - strand, within Shew_0629 at 716.361 kb on - strand, within Shew_0629 at 716.380 kb on - strand, within Shew_0629 at 716.464 kb on + strand, within Shew_0629 at 716.648 kb on + strand at 717.235 kb on + strand, within Shew_0630 at 717.271 kb on + strand, within Shew_0630 at 717.492 kb on - strand at 717.531 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.636 kb on + strand at 717.644 kb on - strand at 717.644 kb on - strand at 718.228 kb on + strand, within Shew_0631 at 718.323 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631 at 718.383 kb on + strand, within Shew_0631
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 715,739 - +0.9 715,785 + -0.5 715,837 - -0.1 716,227 + Shew_0629 0.37 +0.2 716,353 + Shew_0629 0.53 -1.4 716,353 + Shew_0629 0.53 +0.2 716,353 + Shew_0629 0.53 -0.0 716,361 - Shew_0629 0.54 -0.1 716,361 - Shew_0629 0.54 +0.1 716,361 - Shew_0629 0.54 +0.3 716,380 - Shew_0629 0.57 +0.1 716,464 + Shew_0629 0.68 -0.1 716,648 + -0.3 717,235 + Shew_0630 0.64 -1.0 717,271 + Shew_0630 0.68 -0.1 717,492 - -0.0 717,531 + -0.1 717,636 + -0.3 717,636 + -0.1 717,636 + +0.1 717,644 - +0.2 717,644 - +1.0 718,228 + Shew_0631 0.60 -0.1 718,323 + Shew_0631 0.68 -0.0 718,383 + Shew_0631 0.73 -1.2 718,383 + Shew_0631 0.73 -0.1
Or see this region's nucleotide sequence