Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0601 and Shew_0602 are separated by 835 nucleotides Shew_0602 and Shew_0603 are separated by 24 nucleotides Shew_0603 and Shew_0604 are separated by 173 nucleotides
Shew_0601: Shew_0601 - hypothetical protein (RefSeq), at 680,283 to 680,669
_0601
Shew_0602: Shew_0602 - methyltransferase type 12 (RefSeq), at 681,505 to 682,158
_0602
Shew_0603: Shew_0603 - glutathione-dependent formaldehyde-activating, GFA (RefSeq), at 682,183 to 682,602
_0603
Shew_0604: Shew_0604 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 682,776 to 684,251
_0604
Position (kb) 681
682
683 Strain fitness (log2 ratio) -1
0
1 at 680.532 kb on + strand, within Shew_0601 at 680.538 kb on + strand, within Shew_0601 at 680.546 kb on - strand, within Shew_0601 at 680.561 kb on + strand, within Shew_0601 at 680.574 kb on - strand, within Shew_0601 at 680.660 kb on - strand at 680.706 kb on - strand at 680.725 kb on + strand at 680.733 kb on - strand at 680.733 kb on + strand at 680.733 kb on - strand at 680.733 kb on - strand at 680.992 kb on - strand at 681.145 kb on + strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.153 kb on - strand at 681.156 kb on + strand at 681.166 kb on - strand at 681.225 kb on + strand at 681.288 kb on + strand at 681.293 kb on + strand at 681.695 kb on - strand, within Shew_0602 at 681.793 kb on + strand, within Shew_0602 at 681.950 kb on - strand, within Shew_0602 at 681.999 kb on - strand, within Shew_0602 at 682.135 kb on - strand at 682.140 kb on - strand at 682.229 kb on + strand, within Shew_0603 at 682.309 kb on + strand, within Shew_0603 at 682.318 kb on + strand, within Shew_0603 at 682.813 kb on - strand at 682.938 kb on + strand, within Shew_0604 at 682.946 kb on - strand, within Shew_0604 at 682.990 kb on - strand, within Shew_0604 at 683.068 kb on + strand, within Shew_0604 at 683.107 kb on - strand, within Shew_0604
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 680,532 + Shew_0601 0.64 +0.4 680,538 + Shew_0601 0.66 +0.4 680,546 - Shew_0601 0.68 +0.4 680,561 + Shew_0601 0.72 -0.6 680,574 - Shew_0601 0.75 +0.2 680,660 - +0.2 680,706 - -0.0 680,725 + +0.4 680,733 - +0.5 680,733 + -0.1 680,733 - -0.2 680,733 - +0.3 680,992 - -0.0 681,145 + +0.2 681,153 - -1.1 681,153 - +0.7 681,153 - +0.3 681,153 - +0.3 681,156 + -0.5 681,166 - -0.4 681,225 + +0.3 681,288 + -0.9 681,293 + +0.2 681,695 - Shew_0602 0.29 +0.7 681,793 + Shew_0602 0.44 -0.1 681,950 - Shew_0602 0.68 +1.0 681,999 - Shew_0602 0.76 +0.3 682,135 - +0.2 682,140 - +0.4 682,229 + Shew_0603 0.11 +0.2 682,309 + Shew_0603 0.30 -0.3 682,318 + Shew_0603 0.32 +0.0 682,813 - +0.4 682,938 + Shew_0604 0.11 -0.1 682,946 - Shew_0604 0.12 +0.1 682,990 - Shew_0604 0.14 +0.3 683,068 + Shew_0604 0.20 +1.4 683,107 - Shew_0604 0.22 -0.3
Or see this region's nucleotide sequence