Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0492 and Shew_0493 are separated by 161 nucleotides Shew_0493 and Shew_0494 are separated by 243 nucleotides Shew_0494 and Shew_0495 are separated by 184 nucleotides
Shew_0492: Shew_0492 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 548,543 to 550,135
_0492
Shew_0493: Shew_0493 - hypothetical protein (RefSeq), at 550,297 to 550,803
_0493
Shew_0494: Shew_0494 - hypothetical protein (RefSeq), at 551,047 to 551,799
_0494
Shew_0495: Shew_0495 - hypothetical protein (RefSeq), at 551,984 to 552,685
_0495
Position (kb) 551
552 Strain fitness (log2 ratio) -1
0
1 at 550.217 kb on - strand at 550.224 kb on + strand at 550.268 kb on - strand at 550.616 kb on + strand, within Shew_0493 at 550.616 kb on + strand, within Shew_0493 at 550.917 kb on + strand at 551.301 kb on + strand, within Shew_0494 at 551.302 kb on + strand, within Shew_0494 at 551.505 kb on + strand, within Shew_0494 at 551.722 kb on + strand, within Shew_0494 at 551.722 kb on + strand, within Shew_0494 at 551.871 kb on + strand at 551.871 kb on + strand at 551.879 kb on - strand at 551.879 kb on - strand at 552.284 kb on - strand, within Shew_0495 at 552.763 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 550,217 - -0.2 550,224 + +0.0 550,268 - +0.3 550,616 + Shew_0493 0.63 +0.1 550,616 + Shew_0493 0.63 -0.7 550,917 + +0.5 551,301 + Shew_0494 0.34 -0.2 551,302 + Shew_0494 0.34 -0.5 551,505 + Shew_0494 0.61 -0.6 551,722 + Shew_0494 0.90 +1.0 551,722 + Shew_0494 0.90 +0.1 551,871 + +0.6 551,871 + +0.1 551,879 - -0.1 551,879 - +0.4 552,284 - Shew_0495 0.43 -0.8 552,763 - -0.1
Or see this region's nucleotide sequence