Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0458 and Shew_0459 are separated by 240 nucleotides Shew_0459 and Shew_0460 are separated by 222 nucleotides
Shew_0458: Shew_0458 - PhoH family protein (RefSeq), at 510,634 to 512,028
_0458
Shew_0459: Shew_0459 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 512,269 to 515,961
_0459
Shew_0460: Shew_0460 - hypothetical protein (RefSeq), at 516,184 to 518,583
_0460
Position (kb) 512
513
514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 511.310 kb on + strand, within Shew_0458 at 511.310 kb on + strand, within Shew_0458 at 511.409 kb on - strand, within Shew_0458 at 511.521 kb on - strand, within Shew_0458 at 511.663 kb on - strand, within Shew_0458 at 511.663 kb on + strand, within Shew_0458 at 511.850 kb on + strand, within Shew_0458 at 511.860 kb on + strand, within Shew_0458 at 511.913 kb on + strand at 511.921 kb on - strand at 511.923 kb on + strand at 511.931 kb on - strand at 512.133 kb on - strand at 512.140 kb on - strand at 513.185 kb on + strand, within Shew_0459 at 513.185 kb on + strand, within Shew_0459 at 513.195 kb on + strand, within Shew_0459 at 514.671 kb on + strand, within Shew_0459 at 515.002 kb on + strand, within Shew_0459 at 515.010 kb on - strand, within Shew_0459 at 515.070 kb on + strand, within Shew_0459 at 515.815 kb on - strand at 516.098 kb on - strand at 516.588 kb on + strand, within Shew_0460 at 516.667 kb on - strand, within Shew_0460 at 516.680 kb on + strand, within Shew_0460 at 516.961 kb on + strand, within Shew_0460
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 511,310 + Shew_0458 0.48 -0.3 511,310 + Shew_0458 0.48 -0.1 511,409 - Shew_0458 0.56 +0.4 511,521 - Shew_0458 0.64 +0.1 511,663 - Shew_0458 0.74 -1.0 511,663 + Shew_0458 0.74 +1.1 511,850 + Shew_0458 0.87 +0.1 511,860 + Shew_0458 0.88 -0.4 511,913 + -0.0 511,921 - +0.3 511,923 + -0.3 511,931 - +0.6 512,133 - +1.9 512,140 - +0.5 513,185 + Shew_0459 0.25 -2.3 513,185 + Shew_0459 0.25 -1.5 513,195 + Shew_0459 0.25 +1.0 514,671 + Shew_0459 0.65 -2.8 515,002 + Shew_0459 0.74 -1.8 515,010 - Shew_0459 0.74 -2.0 515,070 + Shew_0459 0.76 -1.6 515,815 - -0.0 516,098 - +0.7 516,588 + Shew_0460 0.17 +0.6 516,667 - Shew_0460 0.20 +0.3 516,680 + Shew_0460 0.21 -0.0 516,961 + Shew_0460 0.32 -0.0
Or see this region's nucleotide sequence