Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0405 and Shew_0406 overlap by 1 nucleotides Shew_0406 and Shew_0407 are separated by 97 nucleotides Shew_0407 and Shew_0408 overlap by 1 nucleotides
Shew_0405: Shew_0405 - rod shape-determining protein MreD (RefSeq), at 455,056 to 455,544
_0405
Shew_0406: Shew_0406 - maf protein (RefSeq), at 455,544 to 456,134
_0406
Shew_0407: Shew_0407 - ribonuclease G (RefSeq), at 456,232 to 457,734
_0407
Shew_0408: Shew_0408 - hypothetical protein (RefSeq), at 457,734 to 462,044
_0408
Position (kb) 456
457
458 Strain fitness (log2 ratio) -1
0
1
2 at 455.556 kb on + strand at 455.714 kb on + strand, within Shew_0406 at 455.796 kb on + strand, within Shew_0406 at 455.865 kb on + strand, within Shew_0406 at 455.969 kb on - strand, within Shew_0406 at 456.345 kb on + strand at 456.631 kb on + strand, within Shew_0407 at 456.840 kb on + strand, within Shew_0407 at 457.184 kb on - strand, within Shew_0407 at 457.203 kb on + strand, within Shew_0407 at 457.219 kb on + strand, within Shew_0407 at 457.834 kb on - strand at 457.834 kb on - strand at 458.047 kb on + strand at 458.232 kb on + strand, within Shew_0408 at 458.427 kb on + strand, within Shew_0408 at 458.427 kb on + strand, within Shew_0408 at 458.548 kb on - strand, within Shew_0408 at 458.732 kb on - strand, within Shew_0408
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 455,556 + -0.0 455,714 + Shew_0406 0.29 +0.3 455,796 + Shew_0406 0.43 -0.1 455,865 + Shew_0406 0.54 -0.3 455,969 - Shew_0406 0.72 +0.5 456,345 + -1.0 456,631 + Shew_0407 0.27 -0.2 456,840 + Shew_0407 0.40 -0.4 457,184 - Shew_0407 0.63 -0.8 457,203 + Shew_0407 0.65 -0.5 457,219 + Shew_0407 0.66 -1.6 457,834 - +2.4 457,834 - -0.0 458,047 + +0.2 458,232 + Shew_0408 0.12 -0.2 458,427 + Shew_0408 0.16 -0.6 458,427 + Shew_0408 0.16 -0.2 458,548 - Shew_0408 0.19 +0.5 458,732 - Shew_0408 0.23 +0.4
Or see this region's nucleotide sequence