Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0264 and Shew_0265 are separated by 129 nucleotides Shew_0265 and Shew_0266 are separated by 337 nucleotides Shew_0266 and Shew_0267 are separated by 69 nucleotides
Shew_0264: Shew_0264 - serine/threonine protein kinase (RefSeq), at 282,793 to 283,794
_0264
Shew_0265: Shew_0265 - DSBA oxidoreductase (RefSeq), at 283,924 to 284,535
_0265
Shew_0266: Shew_0266 - hypothetical protein (RefSeq), at 284,873 to 285,085
_0266
Shew_0267: Shew_0267 - hypothetical protein (RefSeq), at 285,155 to 285,361
_0267
Position (kb) 283
284
285 Strain fitness (log2 ratio) -1
0
1 at 283.020 kb on + strand, within Shew_0264 at 283.087 kb on + strand, within Shew_0264 at 283.157 kb on + strand, within Shew_0264 at 283.157 kb on + strand, within Shew_0264 at 283.165 kb on - strand, within Shew_0264 at 283.347 kb on - strand, within Shew_0264 at 283.356 kb on + strand, within Shew_0264 at 284.091 kb on - strand, within Shew_0265 at 284.211 kb on - strand, within Shew_0265 at 284.366 kb on + strand, within Shew_0265 at 284.486 kb on - strand at 285.085 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 283,020 + Shew_0264 0.23 +0.1 283,087 + Shew_0264 0.29 +0.5 283,157 + Shew_0264 0.36 +0.3 283,157 + Shew_0264 0.36 -0.9 283,165 - Shew_0264 0.37 +0.4 283,347 - Shew_0264 0.55 +0.5 283,356 + Shew_0264 0.56 +0.1 284,091 - Shew_0265 0.27 +1.4 284,211 - Shew_0265 0.47 +0.9 284,366 + Shew_0265 0.72 +0.4 284,486 - +0.0 285,085 + +0.4
Or see this region's nucleotide sequence