Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0237 and Shew_0238 are separated by 75 nucleotides Shew_0238 and Shew_0239 are separated by 138 nucleotides
Shew_0237: Shew_0237 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 252,445 to 254,343
_0237
Shew_0238: Shew_0238 - porin (RefSeq), at 254,419 to 255,507
_0238
Shew_0239: Shew_0239 - formate dehydrogenase, gamma subunit (RefSeq), at 255,646 to 256,626
_0239
Position (kb) 254
255
256 Strain fitness (log2 ratio) -1
0
1 at 253.444 kb on + strand, within Shew_0237 at 253.539 kb on + strand, within Shew_0237 at 253.588 kb on - strand, within Shew_0237 at 253.720 kb on - strand, within Shew_0237 at 253.901 kb on + strand, within Shew_0237 at 253.934 kb on + strand, within Shew_0237 at 254.074 kb on - strand, within Shew_0237 at 254.226 kb on + strand at 254.378 kb on + strand at 254.383 kb on + strand at 254.401 kb on - strand at 254.401 kb on - strand at 254.612 kb on + strand, within Shew_0238 at 254.661 kb on - strand, within Shew_0238 at 254.778 kb on - strand, within Shew_0238 at 254.782 kb on + strand, within Shew_0238 at 254.825 kb on - strand, within Shew_0238 at 254.859 kb on + strand, within Shew_0238 at 254.869 kb on + strand, within Shew_0238 at 255.431 kb on + strand at 255.436 kb on + strand at 255.581 kb on - strand at 255.727 kb on + strand at 255.791 kb on + strand, within Shew_0239 at 255.905 kb on + strand, within Shew_0239 at 255.924 kb on + strand, within Shew_0239 at 256.098 kb on - strand, within Shew_0239 at 256.169 kb on + strand, within Shew_0239 at 256.379 kb on - strand, within Shew_0239
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 253,444 + Shew_0237 0.53 +0.3 253,539 + Shew_0237 0.58 +1.4 253,588 - Shew_0237 0.60 -0.4 253,720 - Shew_0237 0.67 +0.4 253,901 + Shew_0237 0.77 -0.2 253,934 + Shew_0237 0.78 -0.0 254,074 - Shew_0237 0.86 +0.7 254,226 + +0.2 254,378 + +0.1 254,383 + +0.7 254,401 - +0.4 254,401 - +0.2 254,612 + Shew_0238 0.18 +0.6 254,661 - Shew_0238 0.22 +0.4 254,778 - Shew_0238 0.33 +0.4 254,782 + Shew_0238 0.33 -0.1 254,825 - Shew_0238 0.37 +0.6 254,859 + Shew_0238 0.40 +0.4 254,869 + Shew_0238 0.41 +0.8 255,431 + -0.0 255,436 + -0.3 255,581 - +0.3 255,727 + -0.9 255,791 + Shew_0239 0.15 +0.5 255,905 + Shew_0239 0.26 -0.2 255,924 + Shew_0239 0.28 -0.0 256,098 - Shew_0239 0.46 +0.2 256,169 + Shew_0239 0.53 +0.1 256,379 - Shew_0239 0.75 +0.1
Or see this region's nucleotide sequence