Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rnpB and Shew_0229 are separated by 96 nucleotides Shew_0229 and Shew_0230 are separated by 69 nucleotides Shew_0230 and Shew_0231 are separated by 183 nucleotides
Shew_R0013: rnpB - RNA component of RNaseP (NCBI), at 242,495 to 242,800
rnpB
Shew_0229: Shew_0229 - extracellular solute-binding protein (RefSeq), at 242,897 to 243,706
_0229
Shew_0230: Shew_0230 - hypothetical protein (RefSeq), at 243,776 to 245,485
_0230
Shew_0231: Shew_0231 - hypothetical protein (RefSeq), at 245,669 to 246,940
_0231
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -1
0
1
2 at 242.904 kb on + strand at 243.030 kb on - strand, within Shew_0229 at 243.590 kb on + strand, within Shew_0229 at 243.598 kb on - strand, within Shew_0229 at 243.762 kb on + strand at 243.770 kb on - strand at 243.845 kb on + strand at 243.858 kb on - strand at 243.867 kb on - strand at 244.107 kb on - strand, within Shew_0230 at 244.165 kb on + strand, within Shew_0230 at 244.173 kb on - strand, within Shew_0230 at 244.607 kb on + strand, within Shew_0230 at 244.764 kb on - strand, within Shew_0230 at 244.774 kb on - strand, within Shew_0230 at 244.774 kb on - strand, within Shew_0230 at 245.030 kb on + strand, within Shew_0230 at 245.050 kb on + strand, within Shew_0230 at 245.102 kb on + strand, within Shew_0230 at 245.285 kb on + strand, within Shew_0230 at 245.290 kb on + strand, within Shew_0230 at 245.463 kb on + strand at 245.477 kb on + strand at 245.482 kb on + strand at 245.898 kb on + strand, within Shew_0231 at 245.901 kb on - strand, within Shew_0231 at 245.942 kb on - strand, within Shew_0231 at 246.016 kb on + strand, within Shew_0231 at 246.059 kb on - strand, within Shew_0231 at 246.334 kb on - strand, within Shew_0231 at 246.391 kb on - strand, within Shew_0231
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 242,904 + +0.3 243,030 - Shew_0229 0.16 +0.3 243,590 + Shew_0229 0.86 +0.4 243,598 - Shew_0229 0.87 -0.3 243,762 + -0.1 243,770 - +0.3 243,845 + +0.0 243,858 - +1.0 243,867 - +0.6 244,107 - Shew_0230 0.19 +0.4 244,165 + Shew_0230 0.23 +0.2 244,173 - Shew_0230 0.23 -0.1 244,607 + Shew_0230 0.49 +0.1 244,764 - Shew_0230 0.58 +0.3 244,774 - Shew_0230 0.58 +0.8 244,774 - Shew_0230 0.58 +2.1 245,030 + Shew_0230 0.73 +0.9 245,050 + Shew_0230 0.75 +0.4 245,102 + Shew_0230 0.78 -0.1 245,285 + Shew_0230 0.88 +2.4 245,290 + Shew_0230 0.89 +0.4 245,463 + +0.9 245,477 + +0.2 245,482 + +0.3 245,898 + Shew_0231 0.18 +0.6 245,901 - Shew_0231 0.18 +0.5 245,942 - Shew_0231 0.21 +0.8 246,016 + Shew_0231 0.27 -0.3 246,059 - Shew_0231 0.31 +0.2 246,334 - Shew_0231 0.52 +0.4 246,391 - Shew_0231 0.57 +0.4
Or see this region's nucleotide sequence