Experiment: casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0039 and Shew_0040 are separated by 508 nucleotides Shew_0040 and Shew_0041 are separated by 312 nucleotides
Shew_0039: Shew_0039 - oligopeptidase B (RefSeq), at 43,758 to 45,818
_0039
Shew_0040: Shew_0040 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 46,327 to 46,980
_0040
Shew_0041: Shew_0041 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq), at 47,293 to 50,577
_0041
Position (kb) 46
47 Strain fitness (log2 ratio) -2
-1
0
1 at 45.407 kb on - strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.525 kb on + strand, within Shew_0039 at 45.592 kb on + strand, within Shew_0039 at 45.595 kb on - strand, within Shew_0039 at 45.739 kb on - strand at 45.875 kb on + strand at 45.926 kb on - strand at 45.982 kb on - strand at 46.049 kb on - strand at 46.222 kb on - strand at 46.459 kb on - strand, within Shew_0040 at 46.466 kb on - strand, within Shew_0040 at 46.486 kb on - strand, within Shew_0040 at 46.503 kb on - strand, within Shew_0040 at 46.782 kb on - strand, within Shew_0040 at 46.796 kb on + strand, within Shew_0040 at 46.895 kb on - strand, within Shew_0040 at 47.141 kb on - strand at 47.291 kb on - strand at 47.467 kb on - strand at 47.793 kb on - strand, within Shew_0041 at 47.901 kb on + strand, within Shew_0041 at 47.930 kb on + strand, within Shew_0041
Per-strain Table
Position Strand Gene LocusTag Fraction casaminos (C) remove 45,407 - Shew_0039 0.80 -0.3 45,525 + Shew_0039 0.86 -0.9 45,525 + Shew_0039 0.86 -0.2 45,525 + Shew_0039 0.86 -1.5 45,592 + Shew_0039 0.89 +0.5 45,595 - Shew_0039 0.89 +0.2 45,739 - -0.9 45,875 + -0.1 45,926 - -1.9 45,982 - -0.0 46,049 - -2.0 46,222 - -0.4 46,459 - Shew_0040 0.20 +0.1 46,466 - Shew_0040 0.21 -0.2 46,486 - Shew_0040 0.24 -0.1 46,503 - Shew_0040 0.27 -0.5 46,782 - Shew_0040 0.70 -1.0 46,796 + Shew_0040 0.72 -0.3 46,895 - Shew_0040 0.87 -0.0 47,141 - +0.1 47,291 - -0.1 47,467 - +0.3 47,793 - Shew_0041 0.15 +0.3 47,901 + Shew_0041 0.19 -0.2 47,930 + Shew_0041 0.19 +0.2
Or see this region's nucleotide sequence