Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1830

Experiment: Entrained for one LD cycle; Darkness for 72h then Flask growth in 60 uE constant light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisA and trxA are separated by 251 nucleotidestrxA and guaB are separated by 305 nucleotides Synpcc7942_1829: hisA - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 1,898,205 to 1,898,975 hisA Synpcc7942_1830: trxA - thioredoxin, at 1,899,227 to 1,899,550 trxA Synpcc7942_1831: guaB - inositol-5-monophosphate dehydrogenase, at 1,899,856 to 1,901,019 guaB Position (kb) 1899 1900Strain fitness (log2 ratio) -1 0 1 2at 1899.039 kb on - strandat 1899.049 kb on - strandat 1899.059 kb on + strandat 1899.552 kb on + strandat 1899.603 kb on + strandat 1899.801 kb on - strandat 1899.813 kb on + strandat 1899.834 kb on + strandat 1899.836 kb on - strandat 1899.838 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Entrained for one LD cycle; Darkness for 72h then Flask growth in 60 uE constant light
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1,899,039 - -0.3
1,899,049 - -0.7
1,899,059 + +0.3
1,899,552 + +1.8
1,899,603 + +0.6
1,899,801 - +1.3
1,899,813 + -0.4
1,899,834 + -0.7
1,899,836 - +0.1
1,899,838 + +0.5

Or see this region's nucleotide sequence