Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1567

Experiment: Entrained for one LD cycle; Darkness for 72h then Flask growth in 60 uE constant light

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Entrained for one LD cycle; Darkness for 72h then Flask growth in 60 uE constant light
1,624,710	-	ppk	Synpcc7942_1566	0.57	-0.8
1,624,737	+	ppk	Synpcc7942_1566	0.59	+0.5
1,624,794	-	ppk	Synpcc7942_1566	0.61	+2.4
1,624,802	+	ppk	Synpcc7942_1566	0.62	+1.7
1,624,824	-	ppk	Synpcc7942_1566	0.63	+1.5
1,624,859	+	ppk	Synpcc7942_1566	0.64	+2.0
1,624,867	-	ppk	Synpcc7942_1566	0.65	+1.3
1,624,867	-	ppk	Synpcc7942_1566	0.65	+1.8
1,624,874	-	ppk	Synpcc7942_1566	0.65	+0.6
1,624,896	-	ppk	Synpcc7942_1566	0.66	+2.4
1,624,898	+	ppk	Synpcc7942_1566	0.66	+0.6
1,624,940	+	ppk	Synpcc7942_1566	0.68	+1.1
1,624,974	-	ppk	Synpcc7942_1566	0.69	+1.8
1,624,989	-	ppk	Synpcc7942_1566	0.70	-0.7
1,624,991	+	ppk	Synpcc7942_1566	0.70	+0.3
1,624,999	-	ppk	Synpcc7942_1566	0.71	+0.0
1,625,117	-				+0.7
1,625,229	-	ppk	Synpcc7942_1566	0.81	+1.8
1,625,238	-	ppk	Synpcc7942_1566	0.81	+1.3
1,625,240	+	ppk	Synpcc7942_1566	0.82	-1.8
1,625,286	+	ppk	Synpcc7942_1566	0.84	+0.8
1,625,286	-	ppk	Synpcc7942_1566	0.84	+0.5
1,625,319	-	ppk	Synpcc7942_1566	0.85	+0.6
1,625,428	+				+1.5
1,625,429	-				+0.8
1,625,433	+				+1.3
1,625,434	-				+0.2
1,625,492	-				-0.1
1,625,550	+				-1.0
1,625,553	+				+2.8
1,625,556	-				-0.5
1,625,563	-				+0.2
1,625,602	-				-0.6
1,625,630	+				+0.9
1,625,638	-				-0.4
1,625,651	+				-1.4
1,625,656	+				-0.1
1,625,656	+				+0.4
1,625,664	-				+1.6
1,625,672	-				-0.6
1,625,680	+				+0.6
1,625,771	-		Synpcc7942_1567	0.22	+1.0
1,625,795	-		Synpcc7942_1567	0.29	-1.7
1,625,821	+		Synpcc7942_1567	0.37	-1.3
1,625,825	+		Synpcc7942_1567	0.39	-1.6
1,625,842	+		Synpcc7942_1567	0.44	-1.3
1,625,850	-		Synpcc7942_1567	0.47	-0.7
1,625,850	-		Synpcc7942_1567	0.47	-0.3
1,625,968	-		Synpcc7942_1567	0.84	-1.3
1,626,019	-				+0.5
1,626,049	+				+0.9
1,626,091	-				-0.8
1,626,091	-				-0.8
1,626,092	+				+0.4
1,626,092	+				+0.2
1,626,092	+				-0.5
1,626,100	-				-1.2
1,626,100	-				-0.5
1,626,100	-				+1.0
1,626,100	-				-0.6
1,626,135	-				+0.8
1,626,135	-				+1.1
1,626,152	+				-0.8
1,626,160	-				-0.7
1,626,160	-				-0.6
1,626,179	-				-0.6
1,626,204	+				-0.8
1,626,227	-				-0.8
1,626,251	+				-0.5
1,626,251	+				+1.8
1,626,259	-				+0.2
1,626,264	-				-0.5
1,626,276	+				+0.7
1,626,305	+				-0.4
1,626,318	-				-0.4
1,626,323	+				+0.5
1,626,366	-				-1.4
1,626,391	+		Synpcc7942_1568	0.14	+0.5
1,626,391	+		Synpcc7942_1568	0.14	-0.8
1,626,394	-		Synpcc7942_1568	0.15	-0.5
1,626,399	-		Synpcc7942_1568	0.17	+0.6
1,626,399	-		Synpcc7942_1568	0.17	-0.3
1,626,403	-		Synpcc7942_1568	0.19	-0.4
1,626,518	+		Synpcc7942_1568	0.67	-2.1
1,626,518	+		Synpcc7942_1568	0.67	+1.4
1,626,518	+		Synpcc7942_1568	0.67	-1.0
1,626,518	+		Synpcc7942_1568	0.67	+0.6
1,626,518	+		Synpcc7942_1568	0.67	-0.9
1,626,518	+		Synpcc7942_1568	0.67	+2.0
1,626,518	+		Synpcc7942_1568	0.67	-0.4
1,626,518	+		Synpcc7942_1568	0.67	-0.0
1,626,518	+		Synpcc7942_1568	0.67	+0.5
1,626,518	+		Synpcc7942_1568	0.67	-1.2
1,626,526	-		Synpcc7942_1568	0.70	+1.3
1,626,526	-		Synpcc7942_1568	0.70	-1.0
1,626,526	-		Synpcc7942_1568	0.70	+0.1
1,626,526	-		Synpcc7942_1568	0.70	-0.4
1,626,526	-		Synpcc7942_1568	0.70	+1.1
1,626,526	-		Synpcc7942_1568	0.70	+0.4
1,626,526	-		Synpcc7942_1568	0.70	-1.8
1,626,526	-		Synpcc7942_1568	0.70	-2.1
1,626,526	-		Synpcc7942_1568	0.70	-0.0
1,626,526	-		Synpcc7942_1568	0.70	-0.4
1,626,526	-		Synpcc7942_1568	0.70	-0.1
1,626,526	-		Synpcc7942_1568	0.70	+0.5
1,626,526	-		Synpcc7942_1568	0.70	-3.3
1,626,607	+				+0.6
1,626,649	+				-3.6
1,626,651	+				+1.2
1,626,657	+				+0.2
1,626,659	-				-0.2
1,626,681	-				+1.1
1,626,708	+		Synpcc7942_1569	0.12	-0.3
1,626,716	-		Synpcc7942_1569	0.13	+1.1
1,626,764	-		Synpcc7942_1569	0.24	+0.3
1,626,774	+		Synpcc7942_1569	0.26	-0.0
1,626,774	+		Synpcc7942_1569	0.26	-0.4
1,626,782	-		Synpcc7942_1569	0.28	+1.7
1,626,782	-		Synpcc7942_1569	0.28	+0.6
1,626,782	-		Synpcc7942_1569	0.28	+0.4
1,626,782	-		Synpcc7942_1569	0.28	+0.4
1,626,784	-		Synpcc7942_1569	0.28	-0.1
1,626,806	+		Synpcc7942_1569	0.33	-1.2
1,626,809	+		Synpcc7942_1569	0.34	-0.5
1,626,913	-		Synpcc7942_1569	0.56	+1.0
1,626,928	+		Synpcc7942_1569	0.59	+0.7
1,626,946	+		Synpcc7942_1569	0.63	+0.6
1,626,953	+		Synpcc7942_1569	0.65	-1.4
1,626,999	+		Synpcc7942_1569	0.75	-0.5