Experiment: Entrained for one LD cycle; Darkness for 72h then Flask growth in 60 uE constant light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0473 and Synpcc7942_0474 are separated by 93 nucleotides Synpcc7942_0474 and petN are separated by 15 nucleotides petN and clpS are separated by 7 nucleotides clpS and ylmG are separated by 31 nucleotides ylmG and lepB are separated by 30 nucleotides lepB and lepA overlap by 1 nucleotides
Synpcc7942_0473: Synpcc7942_0473 - NADH:flavin oxidoreductase Old Yellow Enzyme family-like, at 459,096 to 460,202
_0473
Synpcc7942_0474: Synpcc7942_0474 - hypothetical protein, at 460,296 to 460,433
_0474
Synpcc7942_0475: petN - cytochrome b6-f complex subunit VIII, at 460,449 to 460,544
petN
Synpcc7942_0476: clpS - ATP-dependent Clp protease adaptor, at 460,552 to 460,962
clpS
Synpcc7942_0477: ylmG - conserved hypothetical protein YCF19, at 460,994 to 461,293
ylmG
Synpcc7942_0478: lepB - thylakoidal processing peptidase. Serine peptidase. MEROPS family S26A, at 461,324 to 461,935
lepB
Synpcc7942_0479: lepA - GTP-binding protein LepA, at 461,935 to 463,749
lepA
Position (kb) 460
461 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.564 kb on + strand, within Synpcc7942_0473 at 459.578 kb on - strand at 459.624 kb on - strand, within Synpcc7942_0473 at 459.624 kb on - strand, within Synpcc7942_0473 at 459.626 kb on - strand, within Synpcc7942_0473 at 459.626 kb on - strand, within Synpcc7942_0473 at 459.633 kb on + strand, within Synpcc7942_0473 at 459.665 kb on + strand, within Synpcc7942_0473 at 459.670 kb on + strand, within Synpcc7942_0473 at 459.670 kb on + strand, within Synpcc7942_0473 at 459.683 kb on - strand, within Synpcc7942_0473 at 459.689 kb on + strand, within Synpcc7942_0473 at 459.704 kb on - strand, within Synpcc7942_0473 at 459.735 kb on + strand, within Synpcc7942_0473 at 459.735 kb on + strand, within Synpcc7942_0473 at 459.744 kb on + strand, within Synpcc7942_0473 at 459.750 kb on - strand, within Synpcc7942_0473 at 459.754 kb on + strand, within Synpcc7942_0473 at 459.777 kb on + strand, within Synpcc7942_0473 at 459.777 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.778 kb on + strand, within Synpcc7942_0473 at 459.785 kb on - strand, within Synpcc7942_0473 at 459.785 kb on - strand, within Synpcc7942_0473 at 459.792 kb on + strand, within Synpcc7942_0473 at 459.810 kb on + strand, within Synpcc7942_0473 at 459.811 kb on - strand, within Synpcc7942_0473 at 459.811 kb on - strand, within Synpcc7942_0473 at 459.834 kb on + strand, within Synpcc7942_0473 at 459.868 kb on - strand, within Synpcc7942_0473 at 459.916 kb on - strand, within Synpcc7942_0473 at 459.925 kb on + strand, within Synpcc7942_0473 at 459.933 kb on - strand, within Synpcc7942_0473 at 459.933 kb on - strand, within Synpcc7942_0473 at 459.941 kb on + strand, within Synpcc7942_0473 at 459.943 kb on + strand, within Synpcc7942_0473 at 459.951 kb on - strand, within Synpcc7942_0473 at 459.957 kb on - strand, within Synpcc7942_0473 at 459.959 kb on - strand, within Synpcc7942_0473 at 459.966 kb on + strand, within Synpcc7942_0473 at 459.974 kb on - strand, within Synpcc7942_0473 at 459.975 kb on + strand, within Synpcc7942_0473 at 459.976 kb on + strand, within Synpcc7942_0473 at 459.983 kb on - strand, within Synpcc7942_0473 at 459.996 kb on + strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.004 kb on - strand, within Synpcc7942_0473 at 460.054 kb on + strand, within Synpcc7942_0473 at 460.073 kb on + strand, within Synpcc7942_0473 at 460.075 kb on - strand, within Synpcc7942_0473 at 460.081 kb on - strand, within Synpcc7942_0473 at 460.115 kb on + strand at 460.123 kb on - strand at 460.123 kb on - strand at 460.131 kb on + strand at 460.147 kb on - strand at 460.168 kb on - strand at 460.168 kb on - strand at 460.295 kb on + strand at 460.653 kb on + strand at 460.656 kb on - strand, within clpS at 460.656 kb on - strand, within clpS at 460.666 kb on - strand, within clpS at 460.671 kb on - strand, within clpS at 460.688 kb on + strand, within clpS at 460.690 kb on + strand, within clpS at 460.695 kb on + strand, within clpS at 460.703 kb on + strand, within clpS at 460.717 kb on + strand, within clpS at 460.717 kb on + strand, within clpS at 460.769 kb on - strand, within clpS at 460.863 kb on + strand, within clpS at 460.881 kb on - strand, within clpS at 460.883 kb on + strand, within clpS at 460.885 kb on + strand, within clpS at 460.891 kb on - strand, within clpS at 460.915 kb on - strand, within clpS at 460.925 kb on - strand at 460.961 kb on + strand at 460.964 kb on - strand at 461.046 kb on - strand, within ylmG at 461.046 kb on - strand, within ylmG at 461.059 kb on - strand, within ylmG at 461.110 kb on - strand, within ylmG at 461.165 kb on - strand, within ylmG at 461.288 kb on + strand at 461.296 kb on - strand at 461.298 kb on - strand at 461.335 kb on - strand at 461.338 kb on - strand at 461.362 kb on + strand at 461.363 kb on + strand at 461.363 kb on + strand at 461.371 kb on - strand at 461.371 kb on - strand at 461.372 kb on + strand at 461.378 kb on - strand at 461.380 kb on + strand at 461.902 kb on - strand at 461.931 kb on + strand at 461.951 kb on + strand at 461.951 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Entrained for one LD cycle; Darkness for 72h then Flask growth in 60 uE constant light remove 459,564 + Synpcc7942_0473 0.42 +0.7 459,564 + Synpcc7942_0473 0.42 +0.4 459,564 + Synpcc7942_0473 0.42 +1.1 459,564 + Synpcc7942_0473 0.42 -1.5 459,578 - +3.1 459,624 - Synpcc7942_0473 0.48 +0.6 459,624 - Synpcc7942_0473 0.48 +0.8 459,626 - Synpcc7942_0473 0.48 -1.6 459,626 - Synpcc7942_0473 0.48 +0.8 459,633 + Synpcc7942_0473 0.49 -0.0 459,665 + Synpcc7942_0473 0.51 +0.7 459,670 + Synpcc7942_0473 0.52 -1.9 459,670 + Synpcc7942_0473 0.52 -0.8 459,683 - Synpcc7942_0473 0.53 -1.7 459,689 + Synpcc7942_0473 0.54 +0.5 459,704 - Synpcc7942_0473 0.55 +2.3 459,735 + Synpcc7942_0473 0.58 +0.9 459,735 + Synpcc7942_0473 0.58 +1.6 459,744 + Synpcc7942_0473 0.59 -0.1 459,750 - Synpcc7942_0473 0.59 -0.5 459,754 + Synpcc7942_0473 0.59 +0.9 459,777 + Synpcc7942_0473 0.62 -0.3 459,777 + Synpcc7942_0473 0.62 +0.3 459,778 + Synpcc7942_0473 0.62 -0.1 459,778 + Synpcc7942_0473 0.62 -0.4 459,778 + Synpcc7942_0473 0.62 -0.2 459,785 - Synpcc7942_0473 0.62 +1.7 459,785 - Synpcc7942_0473 0.62 -0.3 459,792 + Synpcc7942_0473 0.63 -0.1 459,810 + Synpcc7942_0473 0.64 +1.2 459,811 - Synpcc7942_0473 0.65 +1.2 459,811 - Synpcc7942_0473 0.65 +0.2 459,834 + Synpcc7942_0473 0.67 +1.0 459,868 - Synpcc7942_0473 0.70 -0.1 459,916 - Synpcc7942_0473 0.74 +1.4 459,925 + Synpcc7942_0473 0.75 +0.1 459,933 - Synpcc7942_0473 0.76 +1.4 459,933 - Synpcc7942_0473 0.76 -0.1 459,941 + Synpcc7942_0473 0.76 +0.4 459,943 + Synpcc7942_0473 0.77 +0.6 459,951 - Synpcc7942_0473 0.77 +0.6 459,957 - Synpcc7942_0473 0.78 +2.5 459,959 - Synpcc7942_0473 0.78 -1.3 459,966 + Synpcc7942_0473 0.79 +1.1 459,974 - Synpcc7942_0473 0.79 -0.1 459,975 + Synpcc7942_0473 0.79 +1.1 459,976 + Synpcc7942_0473 0.79 -0.2 459,983 - Synpcc7942_0473 0.80 +1.0 459,996 + Synpcc7942_0473 0.81 +0.5 460,004 - Synpcc7942_0473 0.82 +0.5 460,004 - Synpcc7942_0473 0.82 +1.4 460,004 - Synpcc7942_0473 0.82 -1.2 460,004 - Synpcc7942_0473 0.82 -1.4 460,054 + Synpcc7942_0473 0.87 -2.5 460,073 + Synpcc7942_0473 0.88 +0.3 460,075 - Synpcc7942_0473 0.88 -1.1 460,081 - Synpcc7942_0473 0.89 +0.7 460,115 + -1.3 460,123 - +0.7 460,123 - -0.3 460,131 + -2.6 460,147 - -1.1 460,168 - +0.8 460,168 - +2.5 460,295 + -1.0 460,653 + +1.0 460,656 - clpS Synpcc7942_0476 0.25 -1.6 460,656 - clpS Synpcc7942_0476 0.25 -0.6 460,666 - clpS Synpcc7942_0476 0.28 +2.3 460,671 - clpS Synpcc7942_0476 0.29 +0.7 460,688 + clpS Synpcc7942_0476 0.33 -0.1 460,690 + clpS Synpcc7942_0476 0.34 +1.8 460,695 + clpS Synpcc7942_0476 0.35 -0.7 460,703 + clpS Synpcc7942_0476 0.37 -0.1 460,717 + clpS Synpcc7942_0476 0.40 +0.6 460,717 + clpS Synpcc7942_0476 0.40 +0.9 460,769 - clpS Synpcc7942_0476 0.53 +0.8 460,863 + clpS Synpcc7942_0476 0.76 +0.2 460,881 - clpS Synpcc7942_0476 0.80 +0.1 460,883 + clpS Synpcc7942_0476 0.81 +0.1 460,885 + clpS Synpcc7942_0476 0.81 +1.1 460,891 - clpS Synpcc7942_0476 0.82 -0.5 460,915 - clpS Synpcc7942_0476 0.88 +1.3 460,925 - +0.9 460,961 + -0.5 460,964 - -2.1 461,046 - ylmG Synpcc7942_0477 0.17 +1.4 461,046 - ylmG Synpcc7942_0477 0.17 +0.6 461,059 - ylmG Synpcc7942_0477 0.22 +1.5 461,110 - ylmG Synpcc7942_0477 0.39 +0.1 461,165 - ylmG Synpcc7942_0477 0.57 +1.8 461,288 + +1.5 461,296 - -1.5 461,298 - +1.7 461,335 - +1.5 461,338 - -1.0 461,362 + +1.8 461,363 + -0.8 461,363 + -1.8 461,371 - -0.5 461,371 - -1.0 461,372 + +0.8 461,378 - +0.5 461,380 + +0.6 461,902 - -2.1 461,931 + +0.2 461,951 + +3.8 461,951 + +3.1
Or see this region's nucleotide sequence