Experiment: L-Glutamine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5566 and Pf6N2E2_5567 are separated by 212 nucleotides Pf6N2E2_5567 and Pf6N2E2_5568 overlap by 4 nucleotides Pf6N2E2_5568 and Pf6N2E2_5569 overlap by 1 nucleotides
Pf6N2E2_5566 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3), at 6,384,017 to 6,385,921
_5566
Pf6N2E2_5567 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 6,386,134 to 6,386,868
_5567
Pf6N2E2_5568 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 6,386,865 to 6,387,536
_5568
Pf6N2E2_5569 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 6,387,536 to 6,388,282
_5569
Position (kb)
6386
6387 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 6385.170 kb on + strand, within Pf6N2E2_5566 at 6385.171 kb on - strand, within Pf6N2E2_5566 at 6385.173 kb on + strand, within Pf6N2E2_5566 at 6385.173 kb on + strand, within Pf6N2E2_5566 at 6385.174 kb on - strand, within Pf6N2E2_5566 at 6385.174 kb on - strand, within Pf6N2E2_5566 at 6385.174 kb on - strand, within Pf6N2E2_5566 at 6385.261 kb on + strand, within Pf6N2E2_5566 at 6385.395 kb on + strand, within Pf6N2E2_5566 at 6385.396 kb on - strand, within Pf6N2E2_5566 at 6385.396 kb on - strand, within Pf6N2E2_5566 at 6385.396 kb on - strand, within Pf6N2E2_5566 at 6385.396 kb on - strand, within Pf6N2E2_5566 at 6385.398 kb on + strand, within Pf6N2E2_5566 at 6385.398 kb on + strand, within Pf6N2E2_5566 at 6385.418 kb on - strand, within Pf6N2E2_5566 at 6385.431 kb on + strand, within Pf6N2E2_5566 at 6385.470 kb on + strand, within Pf6N2E2_5566 at 6385.501 kb on - strand, within Pf6N2E2_5566 at 6385.501 kb on - strand, within Pf6N2E2_5566 at 6385.501 kb on - strand, within Pf6N2E2_5566 at 6385.501 kb on - strand, within Pf6N2E2_5566 at 6385.501 kb on - strand, within Pf6N2E2_5566 at 6385.560 kb on + strand, within Pf6N2E2_5566 at 6385.560 kb on + strand, within Pf6N2E2_5566 at 6385.560 kb on + strand, within Pf6N2E2_5566 at 6385.560 kb on + strand, within Pf6N2E2_5566 at 6385.560 kb on + strand, within Pf6N2E2_5566 at 6385.561 kb on - strand, within Pf6N2E2_5566 at 6385.561 kb on - strand, within Pf6N2E2_5566 at 6385.561 kb on - strand, within Pf6N2E2_5566 at 6385.602 kb on + strand, within Pf6N2E2_5566 at 6385.689 kb on + strand, within Pf6N2E2_5566 at 6385.689 kb on + strand, within Pf6N2E2_5566 at 6385.689 kb on + strand, within Pf6N2E2_5566 at 6385.689 kb on + strand, within Pf6N2E2_5566 at 6385.689 kb on + strand, within Pf6N2E2_5566 at 6385.690 kb on - strand, within Pf6N2E2_5566 at 6385.690 kb on - strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.695 kb on + strand, within Pf6N2E2_5566 at 6385.696 kb on - strand, within Pf6N2E2_5566 at 6385.696 kb on - strand, within Pf6N2E2_5566 at 6385.696 kb on - strand, within Pf6N2E2_5566 at 6385.696 kb on - strand, within Pf6N2E2_5566 at 6385.769 kb on + strand at 6385.769 kb on + strand at 6385.769 kb on + strand at 6385.769 kb on + strand at 6385.770 kb on - strand at 6385.776 kb on + strand at 6385.777 kb on - strand at 6385.777 kb on - strand at 6386.020 kb on + strand at 6386.037 kb on - strand at 6386.045 kb on + strand at 6386.046 kb on - strand at 6386.136 kb on - strand at 6386.136 kb on - strand at 6386.248 kb on + strand, within Pf6N2E2_5567 at 6386.248 kb on + strand, within Pf6N2E2_5567 at 6386.249 kb on - strand, within Pf6N2E2_5567 at 6386.821 kb on + strand at 6386.838 kb on - strand at 6386.859 kb on + strand at 6386.859 kb on + strand at 6386.868 kb on + strand at 6386.868 kb on + strand at 6386.929 kb on + strand at 6386.929 kb on + strand at 6386.930 kb on - strand at 6386.930 kb on - strand at 6386.930 kb on - strand at 6387.025 kb on + strand, within Pf6N2E2_5568 at 6387.025 kb on + strand, within Pf6N2E2_5568 at 6387.025 kb on + strand, within Pf6N2E2_5568 at 6387.025 kb on + strand, within Pf6N2E2_5568 at 6387.026 kb on - strand, within Pf6N2E2_5568 at 6387.026 kb on - strand, within Pf6N2E2_5568 at 6387.130 kb on + strand, within Pf6N2E2_5568 at 6387.130 kb on + strand, within Pf6N2E2_5568 at 6387.131 kb on - strand, within Pf6N2E2_5568 at 6387.131 kb on - strand, within Pf6N2E2_5568 at 6387.131 kb on - strand, within Pf6N2E2_5568 at 6387.211 kb on + strand, within Pf6N2E2_5568 at 6387.211 kb on + strand, within Pf6N2E2_5568 at 6387.269 kb on + strand, within Pf6N2E2_5568 at 6387.269 kb on + strand, within Pf6N2E2_5568 at 6387.270 kb on - strand, within Pf6N2E2_5568 at 6387.270 kb on - strand, within Pf6N2E2_5568 at 6387.313 kb on + strand, within Pf6N2E2_5568 at 6387.313 kb on + strand, within Pf6N2E2_5568 at 6387.355 kb on + strand, within Pf6N2E2_5568 at 6387.356 kb on - strand, within Pf6N2E2_5568 at 6387.356 kb on - strand, within Pf6N2E2_5568 at 6387.356 kb on - strand, within Pf6N2E2_5568 at 6387.356 kb on - strand, within Pf6N2E2_5568 at 6387.356 kb on - strand, within Pf6N2E2_5568 at 6387.356 kb on - strand, within Pf6N2E2_5568 at 6387.364 kb on + strand, within Pf6N2E2_5568 at 6387.537 kb on + strand at 6387.537 kb on + strand at 6387.538 kb on - strand at 6387.538 kb on - strand at 6387.541 kb on + strand at 6387.541 kb on + strand at 6387.627 kb on + strand, within Pf6N2E2_5569 at 6387.627 kb on + strand, within Pf6N2E2_5569 at 6387.627 kb on + strand, within Pf6N2E2_5569 at 6387.627 kb on + strand, within Pf6N2E2_5569 at 6387.628 kb on - strand, within Pf6N2E2_5569 at 6387.766 kb on + strand, within Pf6N2E2_5569 at 6387.767 kb on - strand, within Pf6N2E2_5569 at 6387.816 kb on + strand, within Pf6N2E2_5569 at 6387.816 kb on + strand, within Pf6N2E2_5569 at 6387.817 kb on - strand, within Pf6N2E2_5569
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (C) remove 6,385,170 + Pf6N2E2_5566 0.61 -0.1 6,385,171 - Pf6N2E2_5566 0.61 +0.2 6,385,173 + Pf6N2E2_5566 0.61 +0.8 6,385,173 + Pf6N2E2_5566 0.61 +1.0 6,385,174 - Pf6N2E2_5566 0.61 +0.5 6,385,174 - Pf6N2E2_5566 0.61 -1.1 6,385,174 - Pf6N2E2_5566 0.61 -0.3 6,385,261 + Pf6N2E2_5566 0.65 -2.2 6,385,395 + Pf6N2E2_5566 0.72 +0.2 6,385,396 - Pf6N2E2_5566 0.72 +0.1 6,385,396 - Pf6N2E2_5566 0.72 -0.4 6,385,396 - Pf6N2E2_5566 0.72 +0.1 6,385,396 - Pf6N2E2_5566 0.72 -0.2 6,385,398 + Pf6N2E2_5566 0.72 -0.2 6,385,398 + Pf6N2E2_5566 0.72 +0.8 6,385,418 - Pf6N2E2_5566 0.74 +0.9 6,385,431 + Pf6N2E2_5566 0.74 -1.0 6,385,470 + Pf6N2E2_5566 0.76 -0.2 6,385,501 - Pf6N2E2_5566 0.78 +0.1 6,385,501 - Pf6N2E2_5566 0.78 -0.3 6,385,501 - Pf6N2E2_5566 0.78 -0.2 6,385,501 - Pf6N2E2_5566 0.78 +0.1 6,385,501 - Pf6N2E2_5566 0.78 -0.3 6,385,560 + Pf6N2E2_5566 0.81 -0.1 6,385,560 + Pf6N2E2_5566 0.81 +0.7 6,385,560 + Pf6N2E2_5566 0.81 -0.5 6,385,560 + Pf6N2E2_5566 0.81 -0.1 6,385,560 + Pf6N2E2_5566 0.81 -0.9 6,385,561 - Pf6N2E2_5566 0.81 +0.3 6,385,561 - Pf6N2E2_5566 0.81 +0.6 6,385,561 - Pf6N2E2_5566 0.81 +1.1 6,385,602 + Pf6N2E2_5566 0.83 +0.1 6,385,689 + Pf6N2E2_5566 0.88 +1.0 6,385,689 + Pf6N2E2_5566 0.88 +0.1 6,385,689 + Pf6N2E2_5566 0.88 -0.1 6,385,689 + Pf6N2E2_5566 0.88 +0.4 6,385,689 + Pf6N2E2_5566 0.88 +0.0 6,385,690 - Pf6N2E2_5566 0.88 +0.2 6,385,690 - Pf6N2E2_5566 0.88 -0.1 6,385,695 + Pf6N2E2_5566 0.88 +0.3 6,385,695 + Pf6N2E2_5566 0.88 -0.6 6,385,695 + Pf6N2E2_5566 0.88 +0.5 6,385,695 + Pf6N2E2_5566 0.88 -0.3 6,385,695 + Pf6N2E2_5566 0.88 -0.4 6,385,695 + Pf6N2E2_5566 0.88 +0.5 6,385,695 + Pf6N2E2_5566 0.88 -0.5 6,385,695 + Pf6N2E2_5566 0.88 +0.6 6,385,695 + Pf6N2E2_5566 0.88 +0.1 6,385,695 + Pf6N2E2_5566 0.88 +0.7 6,385,695 + Pf6N2E2_5566 0.88 +0.2 6,385,696 - Pf6N2E2_5566 0.88 +0.2 6,385,696 - Pf6N2E2_5566 0.88 -0.1 6,385,696 - Pf6N2E2_5566 0.88 +0.3 6,385,696 - Pf6N2E2_5566 0.88 +0.6 6,385,769 + +0.3 6,385,769 + -0.3 6,385,769 + +0.2 6,385,769 + +0.0 6,385,770 - -0.1 6,385,776 + -0.4 6,385,777 - -0.4 6,385,777 - +0.2 6,386,020 + +0.2 6,386,037 - -0.5 6,386,045 + +0.6 6,386,046 - +0.0 6,386,136 - -0.7 6,386,136 - -0.1 6,386,248 + Pf6N2E2_5567 0.16 -0.6 6,386,248 + Pf6N2E2_5567 0.16 -1.2 6,386,249 - Pf6N2E2_5567 0.16 -0.6 6,386,821 + -0.7 6,386,838 - +0.2 6,386,859 + +0.5 6,386,859 + -1.1 6,386,868 + +0.9 6,386,868 + -0.3 6,386,929 + -0.2 6,386,929 + -0.6 6,386,930 - -0.4 6,386,930 - +0.7 6,386,930 - +0.5 6,387,025 + Pf6N2E2_5568 0.24 -0.7 6,387,025 + Pf6N2E2_5568 0.24 +0.9 6,387,025 + Pf6N2E2_5568 0.24 -0.7 6,387,025 + Pf6N2E2_5568 0.24 -0.0 6,387,026 - Pf6N2E2_5568 0.24 -0.2 6,387,026 - Pf6N2E2_5568 0.24 +1.2 6,387,130 + Pf6N2E2_5568 0.39 +0.9 6,387,130 + Pf6N2E2_5568 0.39 +0.9 6,387,131 - Pf6N2E2_5568 0.40 +0.3 6,387,131 - Pf6N2E2_5568 0.40 +0.9 6,387,131 - Pf6N2E2_5568 0.40 -0.4 6,387,211 + Pf6N2E2_5568 0.51 +0.3 6,387,211 + Pf6N2E2_5568 0.51 +0.1 6,387,269 + Pf6N2E2_5568 0.60 +0.7 6,387,269 + Pf6N2E2_5568 0.60 +0.6 6,387,270 - Pf6N2E2_5568 0.60 -0.0 6,387,270 - Pf6N2E2_5568 0.60 +0.1 6,387,313 + Pf6N2E2_5568 0.67 +0.0 6,387,313 + Pf6N2E2_5568 0.67 -0.2 6,387,355 + Pf6N2E2_5568 0.73 +0.1 6,387,356 - Pf6N2E2_5568 0.73 +1.8 6,387,356 - Pf6N2E2_5568 0.73 -0.2 6,387,356 - Pf6N2E2_5568 0.73 -0.9 6,387,356 - Pf6N2E2_5568 0.73 +0.3 6,387,356 - Pf6N2E2_5568 0.73 -0.7 6,387,356 - Pf6N2E2_5568 0.73 +0.3 6,387,364 + Pf6N2E2_5568 0.74 +0.4 6,387,537 + -0.1 6,387,537 + -0.2 6,387,538 - +0.0 6,387,538 - +0.1 6,387,541 + +0.2 6,387,541 + +0.8 6,387,627 + Pf6N2E2_5569 0.12 +0.5 6,387,627 + Pf6N2E2_5569 0.12 +0.8 6,387,627 + Pf6N2E2_5569 0.12 +0.8 6,387,627 + Pf6N2E2_5569 0.12 +0.5 6,387,628 - Pf6N2E2_5569 0.12 -0.7 6,387,766 + Pf6N2E2_5569 0.31 -0.8 6,387,767 - Pf6N2E2_5569 0.31 +0.4 6,387,816 + Pf6N2E2_5569 0.37 +0.3 6,387,816 + Pf6N2E2_5569 0.37 -1.1 6,387,817 - Pf6N2E2_5569 0.38 +1.9
Or see this region's nucleotide sequence