Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5567

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5566 and Pf6N2E2_5567 are separated by 212 nucleotidesPf6N2E2_5567 and Pf6N2E2_5568 overlap by 4 nucleotidesPf6N2E2_5568 and Pf6N2E2_5569 overlap by 1 nucleotides Pf6N2E2_5566 - Signal transduction histidine kinase regulating C4-dicarboxylate transport system (EC 2.7.13.3), at 6,384,017 to 6,385,921 _5566 Pf6N2E2_5567 - Glutamate Aspartate transport ATP-binding protein GltL (TC 3.A.1.3.4), at 6,386,134 to 6,386,868 _5567 Pf6N2E2_5568 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 6,386,865 to 6,387,536 _5568 Pf6N2E2_5569 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 6,387,536 to 6,388,282 _5569 Position (kb) 6386 6387Strain fitness (log2 ratio) -2 -1 0 1 2at 6385.170 kb on + strand, within Pf6N2E2_5566at 6385.171 kb on - strand, within Pf6N2E2_5566at 6385.173 kb on + strand, within Pf6N2E2_5566at 6385.173 kb on + strand, within Pf6N2E2_5566at 6385.174 kb on - strand, within Pf6N2E2_5566at 6385.174 kb on - strand, within Pf6N2E2_5566at 6385.174 kb on - strand, within Pf6N2E2_5566at 6385.261 kb on + strand, within Pf6N2E2_5566at 6385.395 kb on + strand, within Pf6N2E2_5566at 6385.396 kb on - strand, within Pf6N2E2_5566at 6385.396 kb on - strand, within Pf6N2E2_5566at 6385.396 kb on - strand, within Pf6N2E2_5566at 6385.396 kb on - strand, within Pf6N2E2_5566at 6385.398 kb on + strand, within Pf6N2E2_5566at 6385.398 kb on + strand, within Pf6N2E2_5566at 6385.418 kb on - strand, within Pf6N2E2_5566at 6385.431 kb on + strand, within Pf6N2E2_5566at 6385.470 kb on + strand, within Pf6N2E2_5566at 6385.501 kb on - strand, within Pf6N2E2_5566at 6385.501 kb on - strand, within Pf6N2E2_5566at 6385.501 kb on - strand, within Pf6N2E2_5566at 6385.501 kb on - strand, within Pf6N2E2_5566at 6385.501 kb on - strand, within Pf6N2E2_5566at 6385.560 kb on + strand, within Pf6N2E2_5566at 6385.560 kb on + strand, within Pf6N2E2_5566at 6385.560 kb on + strand, within Pf6N2E2_5566at 6385.560 kb on + strand, within Pf6N2E2_5566at 6385.560 kb on + strand, within Pf6N2E2_5566at 6385.561 kb on - strand, within Pf6N2E2_5566at 6385.561 kb on - strand, within Pf6N2E2_5566at 6385.561 kb on - strand, within Pf6N2E2_5566at 6385.602 kb on + strand, within Pf6N2E2_5566at 6385.689 kb on + strand, within Pf6N2E2_5566at 6385.689 kb on + strand, within Pf6N2E2_5566at 6385.689 kb on + strand, within Pf6N2E2_5566at 6385.689 kb on + strand, within Pf6N2E2_5566at 6385.689 kb on + strand, within Pf6N2E2_5566at 6385.690 kb on - strand, within Pf6N2E2_5566at 6385.690 kb on - strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.695 kb on + strand, within Pf6N2E2_5566at 6385.696 kb on - strand, within Pf6N2E2_5566at 6385.696 kb on - strand, within Pf6N2E2_5566at 6385.696 kb on - strand, within Pf6N2E2_5566at 6385.696 kb on - strand, within Pf6N2E2_5566at 6385.769 kb on + strandat 6385.769 kb on + strandat 6385.769 kb on + strandat 6385.769 kb on + strandat 6385.770 kb on - strandat 6385.776 kb on + strandat 6385.777 kb on - strandat 6385.777 kb on - strandat 6386.020 kb on + strandat 6386.037 kb on - strandat 6386.045 kb on + strandat 6386.046 kb on - strandat 6386.136 kb on - strandat 6386.136 kb on - strandat 6386.248 kb on + strand, within Pf6N2E2_5567at 6386.248 kb on + strand, within Pf6N2E2_5567at 6386.249 kb on - strand, within Pf6N2E2_5567at 6386.821 kb on + strandat 6386.838 kb on - strandat 6386.859 kb on + strandat 6386.859 kb on + strandat 6386.868 kb on + strandat 6386.868 kb on + strandat 6386.929 kb on + strandat 6386.929 kb on + strandat 6386.930 kb on - strandat 6386.930 kb on - strandat 6386.930 kb on - strandat 6387.025 kb on + strand, within Pf6N2E2_5568at 6387.025 kb on + strand, within Pf6N2E2_5568at 6387.025 kb on + strand, within Pf6N2E2_5568at 6387.025 kb on + strand, within Pf6N2E2_5568at 6387.026 kb on - strand, within Pf6N2E2_5568at 6387.026 kb on - strand, within Pf6N2E2_5568at 6387.130 kb on + strand, within Pf6N2E2_5568at 6387.130 kb on + strand, within Pf6N2E2_5568at 6387.131 kb on - strand, within Pf6N2E2_5568at 6387.131 kb on - strand, within Pf6N2E2_5568at 6387.131 kb on - strand, within Pf6N2E2_5568at 6387.211 kb on + strand, within Pf6N2E2_5568at 6387.211 kb on + strand, within Pf6N2E2_5568at 6387.269 kb on + strand, within Pf6N2E2_5568at 6387.269 kb on + strand, within Pf6N2E2_5568at 6387.270 kb on - strand, within Pf6N2E2_5568at 6387.270 kb on - strand, within Pf6N2E2_5568at 6387.313 kb on + strand, within Pf6N2E2_5568at 6387.313 kb on + strand, within Pf6N2E2_5568at 6387.355 kb on + strand, within Pf6N2E2_5568at 6387.356 kb on - strand, within Pf6N2E2_5568at 6387.356 kb on - strand, within Pf6N2E2_5568at 6387.356 kb on - strand, within Pf6N2E2_5568at 6387.356 kb on - strand, within Pf6N2E2_5568at 6387.356 kb on - strand, within Pf6N2E2_5568at 6387.356 kb on - strand, within Pf6N2E2_5568at 6387.364 kb on + strand, within Pf6N2E2_5568at 6387.537 kb on + strandat 6387.537 kb on + strandat 6387.538 kb on - strandat 6387.538 kb on - strandat 6387.541 kb on + strandat 6387.541 kb on + strandat 6387.627 kb on + strand, within Pf6N2E2_5569at 6387.627 kb on + strand, within Pf6N2E2_5569at 6387.627 kb on + strand, within Pf6N2E2_5569at 6387.627 kb on + strand, within Pf6N2E2_5569at 6387.628 kb on - strand, within Pf6N2E2_5569at 6387.766 kb on + strand, within Pf6N2E2_5569at 6387.767 kb on - strand, within Pf6N2E2_5569at 6387.816 kb on + strand, within Pf6N2E2_5569at 6387.816 kb on + strand, within Pf6N2E2_5569at 6387.817 kb on - strand, within Pf6N2E2_5569

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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6,385,170 + Pf6N2E2_5566 0.61 -0.1
6,385,171 - Pf6N2E2_5566 0.61 +0.2
6,385,173 + Pf6N2E2_5566 0.61 +0.8
6,385,173 + Pf6N2E2_5566 0.61 +1.0
6,385,174 - Pf6N2E2_5566 0.61 +0.5
6,385,174 - Pf6N2E2_5566 0.61 -1.1
6,385,174 - Pf6N2E2_5566 0.61 -0.3
6,385,261 + Pf6N2E2_5566 0.65 -2.2
6,385,395 + Pf6N2E2_5566 0.72 +0.2
6,385,396 - Pf6N2E2_5566 0.72 +0.1
6,385,396 - Pf6N2E2_5566 0.72 -0.4
6,385,396 - Pf6N2E2_5566 0.72 +0.1
6,385,396 - Pf6N2E2_5566 0.72 -0.2
6,385,398 + Pf6N2E2_5566 0.72 -0.2
6,385,398 + Pf6N2E2_5566 0.72 +0.8
6,385,418 - Pf6N2E2_5566 0.74 +0.9
6,385,431 + Pf6N2E2_5566 0.74 -1.0
6,385,470 + Pf6N2E2_5566 0.76 -0.2
6,385,501 - Pf6N2E2_5566 0.78 +0.1
6,385,501 - Pf6N2E2_5566 0.78 -0.3
6,385,501 - Pf6N2E2_5566 0.78 -0.2
6,385,501 - Pf6N2E2_5566 0.78 +0.1
6,385,501 - Pf6N2E2_5566 0.78 -0.3
6,385,560 + Pf6N2E2_5566 0.81 -0.1
6,385,560 + Pf6N2E2_5566 0.81 +0.7
6,385,560 + Pf6N2E2_5566 0.81 -0.5
6,385,560 + Pf6N2E2_5566 0.81 -0.1
6,385,560 + Pf6N2E2_5566 0.81 -0.9
6,385,561 - Pf6N2E2_5566 0.81 +0.3
6,385,561 - Pf6N2E2_5566 0.81 +0.6
6,385,561 - Pf6N2E2_5566 0.81 +1.1
6,385,602 + Pf6N2E2_5566 0.83 +0.1
6,385,689 + Pf6N2E2_5566 0.88 +1.0
6,385,689 + Pf6N2E2_5566 0.88 +0.1
6,385,689 + Pf6N2E2_5566 0.88 -0.1
6,385,689 + Pf6N2E2_5566 0.88 +0.4
6,385,689 + Pf6N2E2_5566 0.88 +0.0
6,385,690 - Pf6N2E2_5566 0.88 +0.2
6,385,690 - Pf6N2E2_5566 0.88 -0.1
6,385,695 + Pf6N2E2_5566 0.88 +0.3
6,385,695 + Pf6N2E2_5566 0.88 -0.6
6,385,695 + Pf6N2E2_5566 0.88 +0.5
6,385,695 + Pf6N2E2_5566 0.88 -0.3
6,385,695 + Pf6N2E2_5566 0.88 -0.4
6,385,695 + Pf6N2E2_5566 0.88 +0.5
6,385,695 + Pf6N2E2_5566 0.88 -0.5
6,385,695 + Pf6N2E2_5566 0.88 +0.6
6,385,695 + Pf6N2E2_5566 0.88 +0.1
6,385,695 + Pf6N2E2_5566 0.88 +0.7
6,385,695 + Pf6N2E2_5566 0.88 +0.2
6,385,696 - Pf6N2E2_5566 0.88 +0.2
6,385,696 - Pf6N2E2_5566 0.88 -0.1
6,385,696 - Pf6N2E2_5566 0.88 +0.3
6,385,696 - Pf6N2E2_5566 0.88 +0.6
6,385,769 + +0.3
6,385,769 + -0.3
6,385,769 + +0.2
6,385,769 + +0.0
6,385,770 - -0.1
6,385,776 + -0.4
6,385,777 - -0.4
6,385,777 - +0.2
6,386,020 + +0.2
6,386,037 - -0.5
6,386,045 + +0.6
6,386,046 - +0.0
6,386,136 - -0.7
6,386,136 - -0.1
6,386,248 + Pf6N2E2_5567 0.16 -0.6
6,386,248 + Pf6N2E2_5567 0.16 -1.2
6,386,249 - Pf6N2E2_5567 0.16 -0.6
6,386,821 + -0.7
6,386,838 - +0.2
6,386,859 + +0.5
6,386,859 + -1.1
6,386,868 + +0.9
6,386,868 + -0.3
6,386,929 + -0.2
6,386,929 + -0.6
6,386,930 - -0.4
6,386,930 - +0.7
6,386,930 - +0.5
6,387,025 + Pf6N2E2_5568 0.24 -0.7
6,387,025 + Pf6N2E2_5568 0.24 +0.9
6,387,025 + Pf6N2E2_5568 0.24 -0.7
6,387,025 + Pf6N2E2_5568 0.24 -0.0
6,387,026 - Pf6N2E2_5568 0.24 -0.2
6,387,026 - Pf6N2E2_5568 0.24 +1.2
6,387,130 + Pf6N2E2_5568 0.39 +0.9
6,387,130 + Pf6N2E2_5568 0.39 +0.9
6,387,131 - Pf6N2E2_5568 0.40 +0.3
6,387,131 - Pf6N2E2_5568 0.40 +0.9
6,387,131 - Pf6N2E2_5568 0.40 -0.4
6,387,211 + Pf6N2E2_5568 0.51 +0.3
6,387,211 + Pf6N2E2_5568 0.51 +0.1
6,387,269 + Pf6N2E2_5568 0.60 +0.7
6,387,269 + Pf6N2E2_5568 0.60 +0.6
6,387,270 - Pf6N2E2_5568 0.60 -0.0
6,387,270 - Pf6N2E2_5568 0.60 +0.1
6,387,313 + Pf6N2E2_5568 0.67 +0.0
6,387,313 + Pf6N2E2_5568 0.67 -0.2
6,387,355 + Pf6N2E2_5568 0.73 +0.1
6,387,356 - Pf6N2E2_5568 0.73 +1.8
6,387,356 - Pf6N2E2_5568 0.73 -0.2
6,387,356 - Pf6N2E2_5568 0.73 -0.9
6,387,356 - Pf6N2E2_5568 0.73 +0.3
6,387,356 - Pf6N2E2_5568 0.73 -0.7
6,387,356 - Pf6N2E2_5568 0.73 +0.3
6,387,364 + Pf6N2E2_5568 0.74 +0.4
6,387,537 + -0.1
6,387,537 + -0.2
6,387,538 - +0.0
6,387,538 - +0.1
6,387,541 + +0.2
6,387,541 + +0.8
6,387,627 + Pf6N2E2_5569 0.12 +0.5
6,387,627 + Pf6N2E2_5569 0.12 +0.8
6,387,627 + Pf6N2E2_5569 0.12 +0.8
6,387,627 + Pf6N2E2_5569 0.12 +0.5
6,387,628 - Pf6N2E2_5569 0.12 -0.7
6,387,766 + Pf6N2E2_5569 0.31 -0.8
6,387,767 - Pf6N2E2_5569 0.31 +0.4
6,387,816 + Pf6N2E2_5569 0.37 +0.3
6,387,816 + Pf6N2E2_5569 0.37 -1.1
6,387,817 - Pf6N2E2_5569 0.38 +1.9

Or see this region's nucleotide sequence