Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4087

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4086 and Pf6N2E2_4087 are separated by 135 nucleotidesPf6N2E2_4087 and Pf6N2E2_4088 are separated by 187 nucleotides Pf6N2E2_4086 - sodium/alanine transporter, at 4,763,022 to 4,764,473 _4086 Pf6N2E2_4087 - L-asparaginase (EC 3.5.1.1) (from data), at 4,764,609 to 4,765,613 _4087 Pf6N2E2_4088 - Transcriptional regulator, AraC family, at 4,765,801 to 4,766,793 _4088 Position (kb) 4764 4765 4766Strain fitness (log2 ratio) -3 -2 -1 0 1at 4763.635 kb on + strand, within Pf6N2E2_4086at 4763.655 kb on + strand, within Pf6N2E2_4086at 4763.655 kb on + strand, within Pf6N2E2_4086at 4763.655 kb on + strand, within Pf6N2E2_4086at 4763.655 kb on + strand, within Pf6N2E2_4086at 4763.656 kb on - strand, within Pf6N2E2_4086at 4763.656 kb on - strand, within Pf6N2E2_4086at 4763.656 kb on - strand, within Pf6N2E2_4086at 4763.656 kb on - strand, within Pf6N2E2_4086at 4763.656 kb on - strand, within Pf6N2E2_4086at 4763.656 kb on - strand, within Pf6N2E2_4086at 4763.673 kb on + strand, within Pf6N2E2_4086at 4763.673 kb on + strand, within Pf6N2E2_4086at 4763.673 kb on + strand, within Pf6N2E2_4086at 4763.673 kb on + strand, within Pf6N2E2_4086at 4763.674 kb on - strand, within Pf6N2E2_4086at 4763.674 kb on - strand, within Pf6N2E2_4086at 4763.674 kb on - strand, within Pf6N2E2_4086at 4763.674 kb on - strand, within Pf6N2E2_4086at 4763.701 kb on + strand, within Pf6N2E2_4086at 4763.702 kb on - strand, within Pf6N2E2_4086at 4763.721 kb on - strand, within Pf6N2E2_4086at 4763.837 kb on + strand, within Pf6N2E2_4086at 4763.888 kb on - strand, within Pf6N2E2_4086at 4763.888 kb on - strand, within Pf6N2E2_4086at 4763.964 kb on + strand, within Pf6N2E2_4086at 4763.964 kb on + strand, within Pf6N2E2_4086at 4763.964 kb on + strand, within Pf6N2E2_4086at 4763.964 kb on + strand, within Pf6N2E2_4086at 4763.964 kb on + strand, within Pf6N2E2_4086at 4763.964 kb on + strand, within Pf6N2E2_4086at 4763.965 kb on - strand, within Pf6N2E2_4086at 4763.965 kb on - strand, within Pf6N2E2_4086at 4764.055 kb on + strand, within Pf6N2E2_4086at 4764.056 kb on - strand, within Pf6N2E2_4086at 4764.056 kb on - strand, within Pf6N2E2_4086at 4764.090 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.096 kb on + strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.097 kb on - strand, within Pf6N2E2_4086at 4764.099 kb on + strand, within Pf6N2E2_4086at 4764.099 kb on + strand, within Pf6N2E2_4086at 4764.100 kb on - strand, within Pf6N2E2_4086at 4764.100 kb on - strand, within Pf6N2E2_4086at 4764.100 kb on - strand, within Pf6N2E2_4086at 4764.100 kb on - strand, within Pf6N2E2_4086at 4764.100 kb on - strand, within Pf6N2E2_4086at 4764.100 kb on - strand, within Pf6N2E2_4086at 4764.315 kb on + strand, within Pf6N2E2_4086at 4764.316 kb on - strand, within Pf6N2E2_4086at 4764.316 kb on - strand, within Pf6N2E2_4086at 4764.532 kb on + strandat 4764.533 kb on - strandat 4764.533 kb on - strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.556 kb on + strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.557 kb on - strandat 4764.570 kb on + strandat 4764.571 kb on - strandat 4764.624 kb on + strandat 4764.624 kb on + strandat 4764.624 kb on + strandat 4764.624 kb on + strandat 4764.625 kb on - strandat 4764.735 kb on + strand, within Pf6N2E2_4087at 4764.736 kb on - strand, within Pf6N2E2_4087at 4764.887 kb on - strand, within Pf6N2E2_4087at 4764.887 kb on - strand, within Pf6N2E2_4087at 4764.887 kb on - strand, within Pf6N2E2_4087at 4764.918 kb on + strand, within Pf6N2E2_4087at 4764.918 kb on + strand, within Pf6N2E2_4087at 4764.919 kb on - strand, within Pf6N2E2_4087at 4764.919 kb on - strand, within Pf6N2E2_4087at 4764.919 kb on - strand, within Pf6N2E2_4087at 4765.001 kb on - strand, within Pf6N2E2_4087at 4765.080 kb on + strand, within Pf6N2E2_4087at 4765.080 kb on + strand, within Pf6N2E2_4087at 4765.080 kb on + strand, within Pf6N2E2_4087at 4765.080 kb on + strand, within Pf6N2E2_4087at 4765.080 kb on + strand, within Pf6N2E2_4087at 4765.080 kb on + strand, within Pf6N2E2_4087at 4765.081 kb on - strand, within Pf6N2E2_4087at 4765.081 kb on - strand, within Pf6N2E2_4087at 4765.209 kb on + strand, within Pf6N2E2_4087at 4765.209 kb on + strand, within Pf6N2E2_4087at 4765.210 kb on - strand, within Pf6N2E2_4087at 4765.210 kb on - strand, within Pf6N2E2_4087at 4765.210 kb on - strand, within Pf6N2E2_4087at 4765.327 kb on - strand, within Pf6N2E2_4087at 4765.453 kb on - strand, within Pf6N2E2_4087at 4765.486 kb on + strand, within Pf6N2E2_4087at 4765.487 kb on - strand, within Pf6N2E2_4087at 4765.487 kb on - strand, within Pf6N2E2_4087at 4765.739 kb on + strandat 4765.739 kb on + strandat 4765.740 kb on - strandat 4765.740 kb on - strandat 4765.758 kb on + strandat 4765.758 kb on + strandat 4765.758 kb on + strandat 4765.759 kb on - strandat 4765.759 kb on - strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.760 kb on + strandat 4765.761 kb on - strandat 4765.761 kb on - strandat 4765.761 kb on - strandat 4765.761 kb on - strandat 4765.761 kb on - strandat 4765.845 kb on - strandat 4765.857 kb on + strandat 4765.857 kb on + strandat 4765.857 kb on + strandat 4765.858 kb on - strandat 4765.858 kb on - strandat 4766.050 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.075 kb on + strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.076 kb on - strand, within Pf6N2E2_4088at 4766.158 kb on + strand, within Pf6N2E2_4088at 4766.158 kb on + strand, within Pf6N2E2_4088at 4766.158 kb on + strand, within Pf6N2E2_4088at 4766.159 kb on - strand, within Pf6N2E2_4088at 4766.159 kb on - strand, within Pf6N2E2_4088at 4766.250 kb on + strand, within Pf6N2E2_4088

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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4,763,635 + Pf6N2E2_4086 0.42 -1.2
4,763,655 + Pf6N2E2_4086 0.44 -2.0
4,763,655 + Pf6N2E2_4086 0.44 -1.1
4,763,655 + Pf6N2E2_4086 0.44 -0.8
4,763,655 + Pf6N2E2_4086 0.44 -2.1
4,763,656 - Pf6N2E2_4086 0.44 -0.6
4,763,656 - Pf6N2E2_4086 0.44 -0.8
4,763,656 - Pf6N2E2_4086 0.44 -1.6
4,763,656 - Pf6N2E2_4086 0.44 -1.1
4,763,656 - Pf6N2E2_4086 0.44 -1.3
4,763,656 - Pf6N2E2_4086 0.44 -1.2
4,763,673 + Pf6N2E2_4086 0.45 -0.6
4,763,673 + Pf6N2E2_4086 0.45 -0.6
4,763,673 + Pf6N2E2_4086 0.45 -0.7
4,763,673 + Pf6N2E2_4086 0.45 -0.9
4,763,674 - Pf6N2E2_4086 0.45 -1.6
4,763,674 - Pf6N2E2_4086 0.45 -2.2
4,763,674 - Pf6N2E2_4086 0.45 -2.0
4,763,674 - Pf6N2E2_4086 0.45 -1.8
4,763,701 + Pf6N2E2_4086 0.47 -0.9
4,763,702 - Pf6N2E2_4086 0.47 -2.1
4,763,721 - Pf6N2E2_4086 0.48 -2.2
4,763,837 + Pf6N2E2_4086 0.56 -1.5
4,763,888 - Pf6N2E2_4086 0.60 -0.1
4,763,888 - Pf6N2E2_4086 0.60 -0.9
4,763,964 + Pf6N2E2_4086 0.65 -1.0
4,763,964 + Pf6N2E2_4086 0.65 -1.6
4,763,964 + Pf6N2E2_4086 0.65 -0.7
4,763,964 + Pf6N2E2_4086 0.65 -1.4
4,763,964 + Pf6N2E2_4086 0.65 -1.0
4,763,964 + Pf6N2E2_4086 0.65 -2.0
4,763,965 - Pf6N2E2_4086 0.65 -1.4
4,763,965 - Pf6N2E2_4086 0.65 -1.1
4,764,055 + Pf6N2E2_4086 0.71 -2.1
4,764,056 - Pf6N2E2_4086 0.71 -1.3
4,764,056 - Pf6N2E2_4086 0.71 -2.0
4,764,090 + Pf6N2E2_4086 0.74 -0.3
4,764,096 + Pf6N2E2_4086 0.74 -2.6
4,764,096 + Pf6N2E2_4086 0.74 -1.1
4,764,096 + Pf6N2E2_4086 0.74 -1.6
4,764,096 + Pf6N2E2_4086 0.74 -0.9
4,764,096 + Pf6N2E2_4086 0.74 -0.6
4,764,096 + Pf6N2E2_4086 0.74 -2.2
4,764,096 + Pf6N2E2_4086 0.74 -1.9
4,764,096 + Pf6N2E2_4086 0.74 -1.1
4,764,096 + Pf6N2E2_4086 0.74 -0.9
4,764,096 + Pf6N2E2_4086 0.74 -2.2
4,764,096 + Pf6N2E2_4086 0.74 -3.2
4,764,096 + Pf6N2E2_4086 0.74 -0.6
4,764,096 + Pf6N2E2_4086 0.74 -1.2
4,764,096 + Pf6N2E2_4086 0.74 -0.9
4,764,097 - Pf6N2E2_4086 0.74 -1.7
4,764,097 - Pf6N2E2_4086 0.74 -0.9
4,764,097 - Pf6N2E2_4086 0.74 -1.2
4,764,097 - Pf6N2E2_4086 0.74 -1.1
4,764,097 - Pf6N2E2_4086 0.74 -2.2
4,764,097 - Pf6N2E2_4086 0.74 -1.0
4,764,097 - Pf6N2E2_4086 0.74 -1.6
4,764,097 - Pf6N2E2_4086 0.74 -2.2
4,764,099 + Pf6N2E2_4086 0.74 -2.1
4,764,099 + Pf6N2E2_4086 0.74 +0.1
4,764,100 - Pf6N2E2_4086 0.74 -1.0
4,764,100 - Pf6N2E2_4086 0.74 -1.0
4,764,100 - Pf6N2E2_4086 0.74 -1.7
4,764,100 - Pf6N2E2_4086 0.74 -1.4
4,764,100 - Pf6N2E2_4086 0.74 -1.5
4,764,100 - Pf6N2E2_4086 0.74 -0.3
4,764,315 + Pf6N2E2_4086 0.89 -1.9
4,764,316 - Pf6N2E2_4086 0.89 -1.5
4,764,316 - Pf6N2E2_4086 0.89 -0.5
4,764,532 + -0.3
4,764,533 - -0.6
4,764,533 - +0.6
4,764,556 + -0.4
4,764,556 + -0.0
4,764,556 + +1.4
4,764,556 + +0.4
4,764,556 + -0.2
4,764,556 + +0.4
4,764,556 + -0.6
4,764,556 + -0.3
4,764,557 - -0.4
4,764,557 - -0.2
4,764,557 - -0.4
4,764,557 - -0.4
4,764,557 - -0.7
4,764,557 - -0.6
4,764,557 - +0.3
4,764,557 - -0.5
4,764,557 - +0.3
4,764,557 - +0.4
4,764,570 + -0.6
4,764,571 - -0.0
4,764,624 + +0.0
4,764,624 + -0.5
4,764,624 + -0.3
4,764,624 + +0.4
4,764,625 - +0.3
4,764,735 + Pf6N2E2_4087 0.13 -0.2
4,764,736 - Pf6N2E2_4087 0.13 -0.3
4,764,887 - Pf6N2E2_4087 0.28 -0.7
4,764,887 - Pf6N2E2_4087 0.28 -1.6
4,764,887 - Pf6N2E2_4087 0.28 -1.3
4,764,918 + Pf6N2E2_4087 0.31 +0.3
4,764,918 + Pf6N2E2_4087 0.31 -0.5
4,764,919 - Pf6N2E2_4087 0.31 +0.3
4,764,919 - Pf6N2E2_4087 0.31 +0.4
4,764,919 - Pf6N2E2_4087 0.31 -0.7
4,765,001 - Pf6N2E2_4087 0.39 -0.7
4,765,080 + Pf6N2E2_4087 0.47 +0.2
4,765,080 + Pf6N2E2_4087 0.47 -0.0
4,765,080 + Pf6N2E2_4087 0.47 +0.1
4,765,080 + Pf6N2E2_4087 0.47 -0.3
4,765,080 + Pf6N2E2_4087 0.47 +0.4
4,765,080 + Pf6N2E2_4087 0.47 -0.4
4,765,081 - Pf6N2E2_4087 0.47 -1.3
4,765,081 - Pf6N2E2_4087 0.47 -0.7
4,765,209 + Pf6N2E2_4087 0.60 +0.0
4,765,209 + Pf6N2E2_4087 0.60 +0.1
4,765,210 - Pf6N2E2_4087 0.60 -1.6
4,765,210 - Pf6N2E2_4087 0.60 -0.7
4,765,210 - Pf6N2E2_4087 0.60 -1.2
4,765,327 - Pf6N2E2_4087 0.71 -0.1
4,765,453 - Pf6N2E2_4087 0.84 -0.9
4,765,486 + Pf6N2E2_4087 0.87 +0.4
4,765,487 - Pf6N2E2_4087 0.87 -0.6
4,765,487 - Pf6N2E2_4087 0.87 +0.0
4,765,739 + +0.7
4,765,739 + -0.1
4,765,740 - -0.3
4,765,740 - +0.1
4,765,758 + -0.5
4,765,758 + +0.5
4,765,758 + +0.0
4,765,759 - +0.1
4,765,759 - -0.6
4,765,760 + -0.0
4,765,760 + +0.4
4,765,760 + +0.4
4,765,760 + -0.1
4,765,760 + +0.1
4,765,760 + +0.1
4,765,760 + -0.2
4,765,760 + +0.2
4,765,761 - +1.4
4,765,761 - -0.3
4,765,761 - +0.1
4,765,761 - +0.5
4,765,761 - -0.0
4,765,845 - -0.7
4,765,857 + -0.8
4,765,857 + -0.5
4,765,857 + +0.2
4,765,858 - +0.6
4,765,858 - +0.2
4,766,050 + Pf6N2E2_4088 0.25 +0.6
4,766,075 + Pf6N2E2_4088 0.28 +0.3
4,766,075 + Pf6N2E2_4088 0.28 -0.2
4,766,075 + Pf6N2E2_4088 0.28 -0.1
4,766,075 + Pf6N2E2_4088 0.28 +0.2
4,766,075 + Pf6N2E2_4088 0.28 +0.0
4,766,075 + Pf6N2E2_4088 0.28 -0.5
4,766,075 + Pf6N2E2_4088 0.28 +0.3
4,766,075 + Pf6N2E2_4088 0.28 -0.0
4,766,075 + Pf6N2E2_4088 0.28 +0.0
4,766,075 + Pf6N2E2_4088 0.28 -0.2
4,766,075 + Pf6N2E2_4088 0.28 +0.6
4,766,075 + Pf6N2E2_4088 0.28 -0.4
4,766,076 - Pf6N2E2_4088 0.28 -0.0
4,766,076 - Pf6N2E2_4088 0.28 +0.3
4,766,076 - Pf6N2E2_4088 0.28 +1.2
4,766,076 - Pf6N2E2_4088 0.28 -0.6
4,766,076 - Pf6N2E2_4088 0.28 +1.1
4,766,076 - Pf6N2E2_4088 0.28 +0.4
4,766,076 - Pf6N2E2_4088 0.28 -0.0
4,766,158 + Pf6N2E2_4088 0.36 +0.4
4,766,158 + Pf6N2E2_4088 0.36 +0.6
4,766,158 + Pf6N2E2_4088 0.36 +0.1
4,766,159 - Pf6N2E2_4088 0.36 +0.4
4,766,159 - Pf6N2E2_4088 0.36 +0.3
4,766,250 + Pf6N2E2_4088 0.45 +0.3

Or see this region's nucleotide sequence