Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_441

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_439 and Ac3H11_440 overlap by 1 nucleotidesAc3H11_440 and Ac3H11_441 are separated by 102 nucleotidesAc3H11_441 and Ac3H11_442 are separated by 173 nucleotides Ac3H11_439 - PMID: 11481431, at 126,190 to 126,957 _439 Ac3H11_440 - FIG004454: RNA binding protein, at 126,957 to 127,361 _440 Ac3H11_441 - Heat shock protein FtsJ/RrmJ @ Ribosomal RNA large subunit methyltransferase E (EC 2.1.1.-), at 127,464 to 128,126 _441 Ac3H11_442 - Cell division protein FtsH (EC 3.4.24.-), at 128,300 to 130,219 _442 Position (kb) 127 128 129Strain fitness (log2 ratio) -2 -1 0 1 2 3at 127.441 kb on - strandat 127.441 kb on - strandat 127.441 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.527 kb on - strandat 127.530 kb on + strandat 127.531 kb on - strand, within Ac3H11_441at 127.531 kb on - strand, within Ac3H11_441at 127.531 kb on - strand, within Ac3H11_441at 127.531 kb on - strand, within Ac3H11_441at 127.531 kb on - strand, within Ac3H11_441at 127.531 kb on - strand, within Ac3H11_441at 127.531 kb on - strand, within Ac3H11_441at 127.548 kb on - strand, within Ac3H11_441at 127.576 kb on - strand, within Ac3H11_441at 127.576 kb on - strand, within Ac3H11_441at 127.576 kb on - strand, within Ac3H11_441at 127.604 kb on - strand, within Ac3H11_441at 127.604 kb on - strand, within Ac3H11_441at 127.624 kb on - strand, within Ac3H11_441at 127.647 kb on - strand, within Ac3H11_441at 127.647 kb on - strand, within Ac3H11_441at 127.647 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.669 kb on - strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.773 kb on + strand, within Ac3H11_441at 127.774 kb on - strand, within Ac3H11_441at 127.774 kb on - strand, within Ac3H11_441at 127.774 kb on - strand, within Ac3H11_441at 127.774 kb on - strand, within Ac3H11_441at 127.774 kb on - strand, within Ac3H11_441at 128.001 kb on + strand, within Ac3H11_441at 128.001 kb on + strand, within Ac3H11_441at 128.001 kb on + strand, within Ac3H11_441at 128.001 kb on + strand, within Ac3H11_441at 128.001 kb on + strand, within Ac3H11_441at 128.002 kb on - strand, within Ac3H11_441at 128.002 kb on - strand, within Ac3H11_441at 128.203 kb on + strandat 128.231 kb on + strandat 128.231 kb on + strandat 128.231 kb on + strandat 128.247 kb on + strandat 128.247 kb on + strandat 128.247 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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127,441 - -0.2
127,441 - -0.1
127,441 - +0.7
127,527 - +0.3
127,527 - +1.8
127,527 - +0.3
127,527 - +1.0
127,527 - +0.6
127,527 - +0.2
127,527 - +0.8
127,527 - -1.6
127,527 - +0.3
127,530 + +1.8
127,531 - Ac3H11_441 0.10 +0.5
127,531 - Ac3H11_441 0.10 -0.6
127,531 - Ac3H11_441 0.10 +1.1
127,531 - Ac3H11_441 0.10 -0.8
127,531 - Ac3H11_441 0.10 +1.0
127,531 - Ac3H11_441 0.10 -0.5
127,531 - Ac3H11_441 0.10 -0.4
127,548 - Ac3H11_441 0.13 -0.3
127,576 - Ac3H11_441 0.17 -2.0
127,576 - Ac3H11_441 0.17 +1.3
127,576 - Ac3H11_441 0.17 +2.8
127,604 - Ac3H11_441 0.21 -0.4
127,604 - Ac3H11_441 0.21 +0.4
127,624 - Ac3H11_441 0.24 +1.1
127,647 - Ac3H11_441 0.28 +1.8
127,647 - Ac3H11_441 0.28 -2.3
127,647 - Ac3H11_441 0.28 +0.2
127,669 - Ac3H11_441 0.31 +0.6
127,669 - Ac3H11_441 0.31 -0.7
127,669 - Ac3H11_441 0.31 -0.6
127,669 - Ac3H11_441 0.31 -0.2
127,669 - Ac3H11_441 0.31 -0.8
127,669 - Ac3H11_441 0.31 -1.9
127,669 - Ac3H11_441 0.31 -1.1
127,669 - Ac3H11_441 0.31 +1.1
127,773 + Ac3H11_441 0.47 +1.6
127,773 + Ac3H11_441 0.47 +1.1
127,773 + Ac3H11_441 0.47 +1.3
127,773 + Ac3H11_441 0.47 -0.1
127,773 + Ac3H11_441 0.47 +0.6
127,773 + Ac3H11_441 0.47 -0.3
127,773 + Ac3H11_441 0.47 +0.0
127,774 - Ac3H11_441 0.47 +0.6
127,774 - Ac3H11_441 0.47 -0.2
127,774 - Ac3H11_441 0.47 +1.2
127,774 - Ac3H11_441 0.47 +0.5
127,774 - Ac3H11_441 0.47 -0.4
128,001 + Ac3H11_441 0.81 -0.2
128,001 + Ac3H11_441 0.81 +1.3
128,001 + Ac3H11_441 0.81 +0.4
128,001 + Ac3H11_441 0.81 -1.0
128,001 + Ac3H11_441 0.81 +1.5
128,002 - Ac3H11_441 0.81 +0.5
128,002 - Ac3H11_441 0.81 -0.1
128,203 + +0.8
128,231 + -0.1
128,231 + +1.0
128,231 + +0.4
128,247 + +0.2
128,247 + -0.2
128,247 + -0.8

Or see this region's nucleotide sequence