Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_376

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_375 and Ac3H11_376 are separated by 301 nucleotidesAc3H11_376 and Ac3H11_564 are separated by 16 nucleotidesAc3H11_564 and Ac3H11_377 are separated by 63 nucleotides Ac3H11_375 - Tartrate dehydrogenase (EC 1.1.1.93) @ Tartrate decarboxylase (EC 4.1.1.73) @ D-malic enzyme (EC 1.1.1.83), at 50,604 to 51,698 _375 Ac3H11_376 - DNA-binding protein HU-beta, at 52,000 to 52,272 _376 Ac3H11_564 - tRNA-Val-TAC, at 52,289 to 52,361 _564 Ac3H11_377 - Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8), at 52,425 to 54,353 _377 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 51.034 kb on - strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.057 kb on + strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.058 kb on - strand, within Ac3H11_375at 51.253 kb on - strand, within Ac3H11_375at 51.739 kb on + strandat 51.739 kb on + strandat 51.790 kb on + strandat 51.791 kb on - strandat 51.796 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.834 kb on + strandat 51.889 kb on - strandat 51.889 kb on - strandat 52.191 kb on + strand, within Ac3H11_376

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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51,034 - Ac3H11_375 0.39 +0.4
51,057 + Ac3H11_375 0.41 -0.3
51,057 + Ac3H11_375 0.41 +0.1
51,057 + Ac3H11_375 0.41 -0.2
51,057 + Ac3H11_375 0.41 -0.2
51,057 + Ac3H11_375 0.41 +0.1
51,057 + Ac3H11_375 0.41 +0.5
51,057 + Ac3H11_375 0.41 -0.2
51,057 + Ac3H11_375 0.41 -0.8
51,058 - Ac3H11_375 0.41 +0.7
51,058 - Ac3H11_375 0.41 -0.8
51,058 - Ac3H11_375 0.41 +0.7
51,058 - Ac3H11_375 0.41 +1.2
51,058 - Ac3H11_375 0.41 +0.8
51,253 - Ac3H11_375 0.59 -1.1
51,739 + +0.4
51,739 + +1.1
51,790 + -1.3
51,791 - +1.5
51,796 + +0.2
51,834 + -0.3
51,834 + -1.5
51,834 + +2.1
51,889 - -0.3
51,889 - -2.5
52,191 + Ac3H11_376 0.70 -3.2

Or see this region's nucleotide sequence