Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2066

Experiment: Cobalt chloride 0.32 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2064 and Ac3H11_2065 overlap by 11 nucleotidesAc3H11_2065 and Ac3H11_2066 are separated by 14 nucleotidesAc3H11_2066 and Ac3H11_2067 are separated by 229 nucleotides Ac3H11_2064 - glucose ABC transporter, permease component 1 (from data), at 288,985 to 289,866 _2064 Ac3H11_2065 - glucose ABC transporter, permease component 2 (from data), at 289,856 to 290,725 _2065 Ac3H11_2066 - glucose ABC transporter, ATPase component (from data), at 290,740 to 291,807 _2066 Ac3H11_2067 - Glucokinase (EC 2.7.1.2), at 292,037 to 293,014 _2067 Position (kb) 290 291 292Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 289.825 kb on + strandat 289.826 kb on - strandat 289.831 kb on + strandat 289.831 kb on + strandat 289.864 kb on + strandat 289.977 kb on - strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.168 kb on + strand, within Ac3H11_2065at 290.169 kb on - strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.369 kb on + strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.370 kb on - strand, within Ac3H11_2065at 290.372 kb on + strand, within Ac3H11_2065at 290.667 kb on - strandat 290.667 kb on - strandat 290.667 kb on - strandat 290.732 kb on - strandat 291.005 kb on - strand, within Ac3H11_2066at 291.005 kb on - strand, within Ac3H11_2066at 291.419 kb on - strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.439 kb on + strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.440 kb on - strand, within Ac3H11_2066at 291.469 kb on - strand, within Ac3H11_2066at 291.469 kb on - strand, within Ac3H11_2066at 291.469 kb on - strand, within Ac3H11_2066at 291.469 kb on - strand, within Ac3H11_2066at 291.469 kb on - strand, within Ac3H11_2066at 291.469 kb on - strand, within Ac3H11_2066at 291.658 kb on + strand, within Ac3H11_2066at 291.658 kb on + strand, within Ac3H11_2066at 291.658 kb on + strand, within Ac3H11_2066at 291.658 kb on + strand, within Ac3H11_2066at 291.658 kb on + strand, within Ac3H11_2066at 291.658 kb on + strand, within Ac3H11_2066at 291.659 kb on - strand, within Ac3H11_2066at 291.659 kb on - strand, within Ac3H11_2066at 291.659 kb on - strand, within Ac3H11_2066at 291.659 kb on - strand, within Ac3H11_2066at 291.659 kb on - strand, within Ac3H11_2066at 291.659 kb on - strand, within Ac3H11_2066at 291.917 kb on - strandat 292.036 kb on + strandat 292.036 kb on + strandat 292.036 kb on + strandat 292.037 kb on - strandat 292.037 kb on - strandat 292.037 kb on - strandat 292.037 kb on - strandat 292.178 kb on + strand, within Ac3H11_2067at 292.191 kb on + strand, within Ac3H11_2067at 292.192 kb on - strand, within Ac3H11_2067at 292.586 kb on + strand, within Ac3H11_2067at 292.587 kb on - strand, within Ac3H11_2067

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.32 mM
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289,825 + +1.0
289,826 - -1.3
289,831 + -1.1
289,831 + -0.2
289,864 + +0.5
289,977 - Ac3H11_2065 0.14 -0.3
290,168 + Ac3H11_2065 0.36 +0.5
290,168 + Ac3H11_2065 0.36 -1.1
290,168 + Ac3H11_2065 0.36 +0.0
290,168 + Ac3H11_2065 0.36 -0.0
290,169 - Ac3H11_2065 0.36 -0.3
290,369 + Ac3H11_2065 0.59 -0.4
290,369 + Ac3H11_2065 0.59 +0.5
290,369 + Ac3H11_2065 0.59 +0.6
290,369 + Ac3H11_2065 0.59 +1.7
290,370 - Ac3H11_2065 0.59 +0.3
290,370 - Ac3H11_2065 0.59 -0.9
290,370 - Ac3H11_2065 0.59 +0.7
290,370 - Ac3H11_2065 0.59 +0.3
290,370 - Ac3H11_2065 0.59 +1.1
290,372 + Ac3H11_2065 0.59 +0.4
290,667 - +0.4
290,667 - -0.3
290,667 - -1.4
290,732 - -1.6
291,005 - Ac3H11_2066 0.25 +0.0
291,005 - Ac3H11_2066 0.25 +0.5
291,419 - Ac3H11_2066 0.64 -0.5
291,439 + Ac3H11_2066 0.65 +0.3
291,439 + Ac3H11_2066 0.65 -0.8
291,439 + Ac3H11_2066 0.65 -0.2
291,439 + Ac3H11_2066 0.65 -0.1
291,439 + Ac3H11_2066 0.65 +0.3
291,439 + Ac3H11_2066 0.65 -0.4
291,439 + Ac3H11_2066 0.65 -1.3
291,439 + Ac3H11_2066 0.65 -0.7
291,439 + Ac3H11_2066 0.65 -0.1
291,439 + Ac3H11_2066 0.65 +0.6
291,440 - Ac3H11_2066 0.66 -0.4
291,440 - Ac3H11_2066 0.66 +0.2
291,440 - Ac3H11_2066 0.66 -2.4
291,440 - Ac3H11_2066 0.66 -3.0
291,440 - Ac3H11_2066 0.66 -1.3
291,440 - Ac3H11_2066 0.66 -0.2
291,440 - Ac3H11_2066 0.66 -0.1
291,469 - Ac3H11_2066 0.68 +0.3
291,469 - Ac3H11_2066 0.68 -0.2
291,469 - Ac3H11_2066 0.68 -0.7
291,469 - Ac3H11_2066 0.68 -1.1
291,469 - Ac3H11_2066 0.68 +1.2
291,469 - Ac3H11_2066 0.68 +1.0
291,658 + Ac3H11_2066 0.86 +0.5
291,658 + Ac3H11_2066 0.86 +0.1
291,658 + Ac3H11_2066 0.86 -0.1
291,658 + Ac3H11_2066 0.86 +0.5
291,658 + Ac3H11_2066 0.86 +2.5
291,658 + Ac3H11_2066 0.86 +0.3
291,659 - Ac3H11_2066 0.86 -0.4
291,659 - Ac3H11_2066 0.86 -1.4
291,659 - Ac3H11_2066 0.86 -0.5
291,659 - Ac3H11_2066 0.86 +0.3
291,659 - Ac3H11_2066 0.86 -2.2
291,659 - Ac3H11_2066 0.86 +1.4
291,917 - +1.4
292,036 + +0.1
292,036 + -0.5
292,036 + +0.1
292,037 - -1.0
292,037 - +0.1
292,037 - +1.5
292,037 - +0.2
292,178 + Ac3H11_2067 0.14 -0.6
292,191 + Ac3H11_2067 0.16 +0.3
292,192 - Ac3H11_2067 0.16 -1.5
292,586 + Ac3H11_2067 0.56 -1.2
292,587 - Ac3H11_2067 0.56 -0.5

Or see this region's nucleotide sequence