Experiment: 3 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2841 and DvMF_2842 are separated by 219 nucleotides DvMF_2842 and DvMF_2843 are separated by 179 nucleotides DvMF_2843 and DvMF_2844 are separated by 19 nucleotides
DvMF_2841: DvMF_2841 - response regulator receiver protein (RefSeq), at 3,589,572 to 3,590,009
_2841
DvMF_2842: DvMF_2842 - hypothetical protein (RefSeq), at 3,590,229 to 3,590,525
_2842
DvMF_2843: DvMF_2843 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,590,705 to 3,592,348
_2843
DvMF_2844: DvMF_2844 - histidine kinase (RefSeq), at 3,592,368 to 3,594,029
_2844
Position (kb)
3590
3591
3592
3593 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3589.717 kb on + strand, within DvMF_2841 at 3589.817 kb on - strand, within DvMF_2841 at 3589.820 kb on - strand, within DvMF_2841 at 3590.198 kb on + strand at 3590.242 kb on + strand at 3590.439 kb on - strand, within DvMF_2842 at 3590.451 kb on - strand, within DvMF_2842 at 3590.454 kb on + strand, within DvMF_2842 at 3590.471 kb on + strand, within DvMF_2842 at 3590.511 kb on - strand at 3590.539 kb on - strand at 3590.875 kb on + strand, within DvMF_2843 at 3590.883 kb on - strand, within DvMF_2843 at 3590.942 kb on - strand, within DvMF_2843 at 3590.978 kb on - strand, within DvMF_2843 at 3591.011 kb on + strand, within DvMF_2843 at 3591.054 kb on + strand, within DvMF_2843 at 3591.300 kb on + strand, within DvMF_2843 at 3591.390 kb on + strand, within DvMF_2843 at 3591.467 kb on + strand, within DvMF_2843 at 3591.573 kb on + strand, within DvMF_2843 at 3591.581 kb on - strand, within DvMF_2843 at 3591.715 kb on - strand, within DvMF_2843 at 3591.746 kb on - strand, within DvMF_2843 at 3591.753 kb on + strand, within DvMF_2843 at 3591.768 kb on + strand, within DvMF_2843 at 3591.781 kb on - strand, within DvMF_2843 at 3591.790 kb on + strand, within DvMF_2843 at 3592.407 kb on - strand at 3592.412 kb on - strand at 3592.532 kb on + strand at 3592.584 kb on + strand, within DvMF_2844 at 3593.059 kb on + strand, within DvMF_2844 at 3593.170 kb on - strand, within DvMF_2844 at 3593.181 kb on + strand, within DvMF_2844 at 3593.195 kb on + strand, within DvMF_2844
Per-strain Table
Position Strand Gene LocusTag Fraction 3 days starvation remove 3,589,717 + DvMF_2841 0.33 -4.2 3,589,817 - DvMF_2841 0.56 -2.0 3,589,820 - DvMF_2841 0.57 -1.8 3,590,198 + -0.2 3,590,242 + +0.9 3,590,439 - DvMF_2842 0.71 +0.9 3,590,451 - DvMF_2842 0.75 +1.2 3,590,454 + DvMF_2842 0.76 +1.2 3,590,471 + DvMF_2842 0.81 +0.7 3,590,511 - +1.7 3,590,539 - +0.5 3,590,875 + DvMF_2843 0.10 +1.9 3,590,883 - DvMF_2843 0.11 +0.9 3,590,942 - DvMF_2843 0.14 +1.4 3,590,978 - DvMF_2843 0.17 +1.1 3,591,011 + DvMF_2843 0.19 +1.2 3,591,054 + DvMF_2843 0.21 +0.8 3,591,300 + DvMF_2843 0.36 +0.9 3,591,390 + DvMF_2843 0.42 +0.9 3,591,467 + DvMF_2843 0.46 +1.5 3,591,573 + DvMF_2843 0.53 +1.2 3,591,581 - DvMF_2843 0.53 +0.9 3,591,715 - DvMF_2843 0.61 +1.0 3,591,746 - DvMF_2843 0.63 +1.7 3,591,753 + DvMF_2843 0.64 +1.4 3,591,768 + DvMF_2843 0.65 +0.7 3,591,781 - DvMF_2843 0.65 +0.9 3,591,790 + DvMF_2843 0.66 +1.2 3,592,407 - -0.1 3,592,412 - +0.8 3,592,532 + +0.9 3,592,584 + DvMF_2844 0.13 +0.6 3,593,059 + DvMF_2844 0.42 +0.9 3,593,170 - DvMF_2844 0.48 +1.4 3,593,181 + DvMF_2844 0.49 +0.8 3,593,195 + DvMF_2844 0.50 +0.9
Or see this region's nucleotide sequence