Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2432

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2430 and DvMF_2431 are separated by 86 nucleotidesDvMF_2431 and DvMF_2432 are separated by 19 nucleotidesDvMF_2432 and DvMF_2433 are separated by 9 nucleotidesDvMF_2433 and DvMF_2434 overlap by 22 nucleotides DvMF_2430: DvMF_2430 - hypothetical protein (RefSeq), at 3,066,745 to 3,067,110 _2430 DvMF_2431: DvMF_2431 - hypothetical protein (RefSeq), at 3,067,197 to 3,067,970 _2431 DvMF_2432: DvMF_2432 - type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq), at 3,067,990 to 3,068,823 _2432 DvMF_2433: DvMF_2433 - hypothetical protein (RefSeq), at 3,068,833 to 3,069,570 _2433 DvMF_2434: DvMF_2434 - type III secretion system protein (RefSeq), at 3,069,549 to 3,070,166 _2434 Position (kb) 3067 3068 3069Strain fitness (log2 ratio) -2 -1 0 1at 3067.004 kb on - strand, within DvMF_2430at 3067.113 kb on - strandat 3067.235 kb on + strandat 3067.559 kb on + strand, within DvMF_2431at 3067.580 kb on + strand, within DvMF_2431at 3067.670 kb on + strand, within DvMF_2431at 3067.722 kb on - strand, within DvMF_2431at 3067.862 kb on - strand, within DvMF_2431at 3067.952 kb on + strandat 3068.118 kb on + strand, within DvMF_2432at 3068.118 kb on + strand, within DvMF_2432at 3068.126 kb on - strand, within DvMF_2432at 3068.825 kb on - strandat 3068.825 kb on - strandat 3068.943 kb on - strand, within DvMF_2433at 3069.371 kb on + strand, within DvMF_2433at 3069.627 kb on + strand, within DvMF_2434at 3069.633 kb on - strand, within DvMF_2434at 3069.704 kb on + strand, within DvMF_2434

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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3,067,004 - DvMF_2430 0.71 -1.0
3,067,113 - -0.5
3,067,235 + +0.0
3,067,559 + DvMF_2431 0.47 -0.0
3,067,580 + DvMF_2431 0.49 -0.5
3,067,670 + DvMF_2431 0.61 -1.3
3,067,722 - DvMF_2431 0.68 -1.3
3,067,862 - DvMF_2431 0.86 -0.1
3,067,952 + -1.6
3,068,118 + DvMF_2432 0.15 -2.3
3,068,118 + DvMF_2432 0.15 +0.0
3,068,126 - DvMF_2432 0.16 -0.3
3,068,825 - -0.9
3,068,825 - -0.8
3,068,943 - DvMF_2433 0.15 -1.7
3,069,371 + DvMF_2433 0.73 -1.3
3,069,627 + DvMF_2434 0.13 -1.0
3,069,633 - DvMF_2434 0.14 +0.4
3,069,704 + DvMF_2434 0.25 -0.4

Or see this region's nucleotide sequence