Experiment: 3 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2124 and DvMF_2125 are separated by 371 nucleotides DvMF_2125 and DvMF_2126 are separated by 2 nucleotides DvMF_2126 and DvMF_2127 are separated by 279 nucleotides
DvMF_2124: DvMF_2124 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,643,382 to 2,644,011
_2124
DvMF_2125: DvMF_2125 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,644,383 to 2,645,978
_2125
DvMF_2126: DvMF_2126 - Excinuclease ABC C subunit domain protein (RefSeq), at 2,645,981 to 2,646,298
_2126
DvMF_2127: DvMF_2127 - metallo-beta-lactamase family protein (RefSeq), at 2,646,578 to 2,647,318
_2127
Position (kb)
2644
2645
2646 Strain fitness (log2 ratio)
-2
-1
0
1 at 2643.465 kb on + strand, within DvMF_2124 at 2643.930 kb on - strand, within DvMF_2124 at 2643.963 kb on + strand at 2644.055 kb on + strand at 2644.063 kb on - strand at 2644.354 kb on + strand at 2644.362 kb on - strand at 2644.593 kb on - strand, within DvMF_2125 at 2646.025 kb on - strand, within DvMF_2126 at 2646.238 kb on - strand, within DvMF_2126 at 2646.617 kb on - strand at 2646.627 kb on - strand at 2646.778 kb on - strand, within DvMF_2127
Per-strain Table
Position Strand Gene LocusTag Fraction 3 days starvation remove 2,643,465 + DvMF_2124 0.13 -0.5 2,643,930 - DvMF_2124 0.87 -1.0 2,643,963 + -0.4 2,644,055 + -0.1 2,644,063 - -0.8 2,644,354 + -1.0 2,644,362 - -1.9 2,644,593 - DvMF_2125 0.13 -1.1 2,646,025 - DvMF_2126 0.14 -1.1 2,646,238 - DvMF_2126 0.81 +0.2 2,646,617 - -0.4 2,646,627 - -0.5 2,646,778 - DvMF_2127 0.27 -0.8
Or see this region's nucleotide sequence