Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1815

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1813 and DvMF_1814 are separated by 101 nucleotidesDvMF_1814 and DvMF_1815 are separated by 403 nucleotidesDvMF_1815 and DvMF_1816 are separated by 215 nucleotidesDvMF_1816 and DvMF_1817 are separated by 407 nucleotides DvMF_1813: DvMF_1813 - hypothetical protein (RefSeq), at 2,215,176 to 2,215,808 _1813 DvMF_1814: DvMF_1814 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,215,910 to 2,216,104 _1814 DvMF_1815: DvMF_1815 - hypothetical protein (RefSeq), at 2,216,508 to 2,216,786 _1815 DvMF_1816: DvMF_1816 - TPR repeat-containing protein (RefSeq), at 2,217,002 to 2,217,328 _1816 DvMF_1817: DvMF_1817 - chemotaxis protein CheX, putative (RefSeq), at 2,217,736 to 2,218,200 _1817 Position (kb) 2216 2217Strain fitness (log2 ratio) -1 0 1at 2215.628 kb on - strand, within DvMF_1813at 2215.630 kb on + strand, within DvMF_1813at 2215.832 kb on - strandat 2215.902 kb on - strandat 2216.090 kb on - strandat 2216.156 kb on - strandat 2216.184 kb on - strandat 2216.309 kb on - strandat 2216.507 kb on + strandat 2216.547 kb on - strand, within DvMF_1815at 2216.714 kb on + strand, within DvMF_1815at 2216.722 kb on - strand, within DvMF_1815at 2216.740 kb on + strand, within DvMF_1815at 2216.749 kb on + strand, within DvMF_1815at 2216.766 kb on + strandat 2217.000 kb on - strandat 2217.073 kb on - strand, within DvMF_1816at 2217.298 kb on + strandat 2217.354 kb on + strandat 2217.357 kb on - strandat 2217.432 kb on + strandat 2217.548 kb on - strandat 2217.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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2,215,628 - DvMF_1813 0.71 +0.1
2,215,630 + DvMF_1813 0.72 -0.5
2,215,832 - +0.1
2,215,902 - -0.5
2,216,090 - -0.3
2,216,156 - -0.4
2,216,184 - +0.2
2,216,309 - -0.6
2,216,507 + -0.1
2,216,547 - DvMF_1815 0.14 -1.4
2,216,714 + DvMF_1815 0.74 -0.3
2,216,722 - DvMF_1815 0.77 -0.4
2,216,740 + DvMF_1815 0.83 -0.9
2,216,749 + DvMF_1815 0.86 -0.7
2,216,766 + -0.7
2,217,000 - -1.2
2,217,073 - DvMF_1816 0.22 +0.1
2,217,298 + -0.0
2,217,354 + -0.1
2,217,357 - +0.2
2,217,432 + +0.2
2,217,548 - -0.5
2,217,581 - -0.5

Or see this region's nucleotide sequence