Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1328

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1327 and DvMF_1328 are separated by 145 nucleotidesDvMF_1328 and DvMF_1329 are separated by 290 nucleotidesDvMF_1329 and DvMF_1330 are separated by 75 nucleotides DvMF_1327: DvMF_1327 - hypothetical protein (RefSeq), at 1,622,511 to 1,623,554 _1327 DvMF_1328: DvMF_1328 - heavy metal-binding domain-containing protein (RefSeq), at 1,623,700 to 1,623,909 _1328 DvMF_1329: DvMF_1329 - hypothetical protein (RefSeq), at 1,624,200 to 1,624,493 _1329 DvMF_1330: DvMF_1330 - RNA modification enzyme, MiaB family (RefSeq), at 1,624,569 to 1,626,005 _1330 Position (kb) 1623 1624Strain fitness (log2 ratio) -1 0 1at 1623.040 kb on + strand, within DvMF_1327at 1623.291 kb on + strand, within DvMF_1327at 1623.326 kb on - strand, within DvMF_1327at 1623.477 kb on - strandat 1623.744 kb on - strand, within DvMF_1328at 1623.887 kb on + strand, within DvMF_1328at 1624.094 kb on - strandat 1624.126 kb on + strandat 1624.250 kb on - strand, within DvMF_1329at 1624.349 kb on + strand, within DvMF_1329at 1624.414 kb on - strand, within DvMF_1329at 1624.450 kb on - strand, within DvMF_1329at 1624.512 kb on + strandat 1624.666 kb on - strandat 1624.716 kb on + strand, within DvMF_1330at 1624.757 kb on - strand, within DvMF_1330at 1624.821 kb on - strand, within DvMF_1330

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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1,623,040 + DvMF_1327 0.51 -0.8
1,623,291 + DvMF_1327 0.75 -0.4
1,623,326 - DvMF_1327 0.78 -0.6
1,623,477 - -0.3
1,623,744 - DvMF_1328 0.21 -0.7
1,623,887 + DvMF_1328 0.89 -1.3
1,624,094 - -0.6
1,624,126 + -0.6
1,624,250 - DvMF_1329 0.17 +1.0
1,624,349 + DvMF_1329 0.51 -0.1
1,624,414 - DvMF_1329 0.73 -1.1
1,624,450 - DvMF_1329 0.85 -0.6
1,624,512 + -1.2
1,624,666 - -0.3
1,624,716 + DvMF_1330 0.10 -0.9
1,624,757 - DvMF_1330 0.13 -1.2
1,624,821 - DvMF_1330 0.18 -1.7

Or see this region's nucleotide sequence