Experiment: 3 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1317 and DvMF_1318 overlap by 4 nucleotides DvMF_1318 and DvMF_1319 are separated by 383 nucleotides DvMF_1319 and DvMF_1320 are separated by 228 nucleotides DvMF_1320 and DvMF_1321 are separated by 18 nucleotides
DvMF_1317: DvMF_1317 - ABC transporter related (RefSeq), at 1,609,604 to 1,610,359
_1317
DvMF_1318: DvMF_1318 - BioY protein (RefSeq), at 1,610,356 to 1,610,925
_1318
DvMF_1319: DvMF_1319 - Lipocalin (RefSeq), at 1,611,309 to 1,612,091
_1319
DvMF_1320: DvMF_1320 - nickel responsive regulator (RefSeq), at 1,612,320 to 1,612,739
_1320
DvMF_1321: DvMF_1321 - putative GTP cyclohydrolase (RefSeq), at 1,612,758 to 1,613,537
_1321
Position (kb)
1611
1612
1613 Strain fitness (log2 ratio)
-1
0
1 at 1610.370 kb on - strand at 1610.679 kb on + strand, within DvMF_1318 at 1610.810 kb on - strand, within DvMF_1318 at 1610.843 kb on + strand, within DvMF_1318 at 1611.063 kb on - strand at 1611.100 kb on + strand at 1611.190 kb on + strand at 1611.208 kb on - strand at 1611.488 kb on + strand, within DvMF_1319 at 1611.583 kb on + strand, within DvMF_1319 at 1611.591 kb on - strand, within DvMF_1319 at 1611.722 kb on + strand, within DvMF_1319 at 1611.771 kb on + strand, within DvMF_1319 at 1612.354 kb on + strand at 1612.354 kb on + strand at 1612.743 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 3 days starvation remove 1,610,370 - -1.5 1,610,679 + DvMF_1318 0.57 -0.4 1,610,810 - DvMF_1318 0.80 +0.9 1,610,843 + DvMF_1318 0.85 +0.3 1,611,063 - +0.3 1,611,100 + -0.6 1,611,190 + -0.2 1,611,208 - +1.4 1,611,488 + DvMF_1319 0.23 -0.5 1,611,583 + DvMF_1319 0.35 -0.8 1,611,591 - DvMF_1319 0.36 -1.0 1,611,722 + DvMF_1319 0.53 -0.6 1,611,771 + DvMF_1319 0.59 -0.7 1,612,354 + -0.7 1,612,354 + -1.2 1,612,743 - -0.4
Or see this region's nucleotide sequence