Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1314

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1313 and DvMF_1314 are separated by 331 nucleotidesDvMF_1314 and DvMF_1315 are separated by 283 nucleotides DvMF_1313: DvMF_1313 - hypothetical protein (RefSeq), at 1,603,542 to 1,604,411 _1313 DvMF_1314: DvMF_1314 - putative aminopeptidase 1 (RefSeq), at 1,604,743 to 1,606,194 _1314 DvMF_1315: DvMF_1315 - iron-containing alcohol dehydrogenase (RefSeq), at 1,606,478 to 1,607,659 _1315 Position (kb) 1604 1605 1606 1607Strain fitness (log2 ratio) -1 0 1 2at 1604.440 kb on - strandat 1604.510 kb on + strandat 1604.535 kb on + strandat 1604.625 kb on + strandat 1604.660 kb on - strandat 1604.914 kb on + strand, within DvMF_1314at 1604.963 kb on - strand, within DvMF_1314at 1605.222 kb on + strand, within DvMF_1314at 1605.306 kb on + strand, within DvMF_1314at 1605.424 kb on + strand, within DvMF_1314at 1605.562 kb on - strand, within DvMF_1314at 1605.758 kb on - strand, within DvMF_1314at 1606.110 kb on + strandat 1606.124 kb on + strandat 1606.134 kb on + strandat 1606.149 kb on + strandat 1606.636 kb on - strand, within DvMF_1315at 1606.641 kb on - strand, within DvMF_1315at 1606.684 kb on + strand, within DvMF_1315at 1606.721 kb on + strand, within DvMF_1315at 1606.729 kb on - strand, within DvMF_1315at 1606.985 kb on - strand, within DvMF_1315

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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1,604,440 - -0.0
1,604,510 + -0.4
1,604,535 + -0.8
1,604,625 + -0.2
1,604,660 - -0.4
1,604,914 + DvMF_1314 0.12 -0.3
1,604,963 - DvMF_1314 0.15 +0.4
1,605,222 + DvMF_1314 0.33 +2.5
1,605,306 + DvMF_1314 0.39 +0.1
1,605,424 + DvMF_1314 0.47 -0.1
1,605,562 - DvMF_1314 0.56 -0.5
1,605,758 - DvMF_1314 0.70 -0.4
1,606,110 + -0.8
1,606,124 + -0.8
1,606,134 + -0.4
1,606,149 + -1.2
1,606,636 - DvMF_1315 0.13 -0.4
1,606,641 - DvMF_1315 0.14 -0.7
1,606,684 + DvMF_1315 0.17 -0.6
1,606,721 + DvMF_1315 0.21 -0.2
1,606,729 - DvMF_1315 0.21 -0.9
1,606,985 - DvMF_1315 0.43 -0.5

Or see this region's nucleotide sequence