Experiment: 3 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0808 and DvMF_0809 are separated by 449 nucleotides DvMF_0809 and DvMF_0810 are separated by 155 nucleotides
DvMF_0808: DvMF_0808 - transcriptional regulator, AraC family (RefSeq), at 974,173 to 974,967
_0808
DvMF_0809: DvMF_0809 - glycerol kinase (RefSeq), at 975,417 to 976,910
_0809
DvMF_0810: DvMF_0810 - major intrinsic protein (RefSeq), at 977,066 to 977,824
_0810
Position (kb) 975
976
977 Strain fitness (log2 ratio) -2
-1
0
1
2 at 974.428 kb on + strand, within DvMF_0808 at 974.446 kb on + strand, within DvMF_0808 at 974.557 kb on - strand, within DvMF_0808 at 974.675 kb on - strand, within DvMF_0808 at 974.739 kb on - strand, within DvMF_0808 at 974.779 kb on - strand, within DvMF_0808 at 974.951 kb on - strand at 975.441 kb on - strand at 975.483 kb on + strand at 975.614 kb on + strand, within DvMF_0809 at 975.696 kb on + strand, within DvMF_0809 at 975.790 kb on + strand, within DvMF_0809 at 975.824 kb on + strand, within DvMF_0809 at 975.824 kb on + strand, within DvMF_0809 at 975.832 kb on - strand at 976.003 kb on + strand, within DvMF_0809 at 976.093 kb on + strand, within DvMF_0809 at 976.272 kb on - strand, within DvMF_0809 at 976.482 kb on + strand, within DvMF_0809 at 976.615 kb on + strand, within DvMF_0809 at 976.644 kb on + strand, within DvMF_0809 at 976.746 kb on - strand, within DvMF_0809 at 977.079 kb on + strand at 977.189 kb on - strand, within DvMF_0810 at 977.191 kb on + strand, within DvMF_0810 at 977.255 kb on + strand, within DvMF_0810 at 977.272 kb on + strand, within DvMF_0810 at 977.421 kb on - strand, within DvMF_0810 at 977.556 kb on + strand, within DvMF_0810
Per-strain Table
Position Strand Gene LocusTag Fraction 3 days starvation remove 974,428 + DvMF_0808 0.32 -0.6 974,446 + DvMF_0808 0.34 -0.7 974,557 - DvMF_0808 0.48 -0.8 974,675 - DvMF_0808 0.63 -0.4 974,739 - DvMF_0808 0.71 -0.4 974,779 - DvMF_0808 0.76 +0.1 974,951 - -0.5 975,441 - -1.3 975,483 + -2.7 975,614 + DvMF_0809 0.13 -0.2 975,696 + DvMF_0809 0.19 -1.4 975,790 + DvMF_0809 0.25 -1.3 975,824 + DvMF_0809 0.27 -1.7 975,824 + DvMF_0809 0.27 -1.0 975,832 - +1.9 976,003 + DvMF_0809 0.39 -1.7 976,093 + DvMF_0809 0.45 -2.1 976,272 - DvMF_0809 0.57 -1.5 976,482 + DvMF_0809 0.71 -1.7 976,615 + DvMF_0809 0.80 +0.0 976,644 + DvMF_0809 0.82 -1.3 976,746 - DvMF_0809 0.89 -1.8 977,079 + +0.6 977,189 - DvMF_0810 0.16 -0.1 977,191 + DvMF_0810 0.16 -0.5 977,255 + DvMF_0810 0.25 -1.0 977,272 + DvMF_0810 0.27 -0.5 977,421 - DvMF_0810 0.47 -0.8 977,556 + DvMF_0810 0.65 -1.4
Or see this region's nucleotide sequence