Experiment: 3 days starvation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thiG and DvMF_0801 overlap by 1 nucleotides DvMF_0801 and DvMF_0802 are separated by 433 nucleotides DvMF_0802 and DvMF_0803 are separated by 3 nucleotides
DvMF_0800: thiG - thiazole synthase (RefSeq), at 964,667 to 965,467
thiG
DvMF_0801: DvMF_0801 - thiamine biosynthesis protein ThiS (RefSeq), at 965,467 to 965,667
_0801
DvMF_0802: DvMF_0802 - ABC transporter related (RefSeq), at 966,101 to 967,405
_0802
DvMF_0803: DvMF_0803 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 967,409 to 969,139
_0803
Position (kb) 966
967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 965.230 kb on + strand, within thiG at 965.238 kb on + strand, within thiG at 965.297 kb on + strand, within thiG at 965.317 kb on + strand, within thiG at 965.348 kb on - strand, within thiG at 965.356 kb on + strand, within thiG at 965.356 kb on + strand, within thiG at 965.493 kb on - strand, within DvMF_0801 at 965.525 kb on + strand, within DvMF_0801 at 965.542 kb on - strand, within DvMF_0801 at 965.997 kb on + strand at 966.383 kb on + strand, within DvMF_0802 at 966.561 kb on - strand, within DvMF_0802 at 966.786 kb on + strand, within DvMF_0802 at 966.810 kb on - strand, within DvMF_0802 at 967.030 kb on + strand, within DvMF_0802 at 967.030 kb on + strand, within DvMF_0802 at 967.038 kb on - strand, within DvMF_0802 at 967.048 kb on + strand, within DvMF_0802 at 967.056 kb on - strand, within DvMF_0802 at 967.139 kb on - strand, within DvMF_0802 at 967.156 kb on - strand, within DvMF_0802 at 967.181 kb on - strand, within DvMF_0802 at 967.205 kb on - strand, within DvMF_0802 at 967.210 kb on - strand, within DvMF_0802 at 967.343 kb on - strand at 967.377 kb on - strand at 967.681 kb on + strand, within DvMF_0803 at 967.694 kb on + strand, within DvMF_0803 at 967.735 kb on + strand, within DvMF_0803 at 967.735 kb on + strand, within DvMF_0803 at 967.743 kb on - strand, within DvMF_0803 at 967.868 kb on - strand, within DvMF_0803 at 967.917 kb on + strand, within DvMF_0803 at 967.933 kb on - strand, within DvMF_0803 at 967.982 kb on - strand, within DvMF_0803 at 968.119 kb on - strand, within DvMF_0803 at 968.164 kb on + strand, within DvMF_0803 at 968.251 kb on - strand, within DvMF_0803 at 968.360 kb on - strand, within DvMF_0803 at 968.379 kb on + strand, within DvMF_0803
Per-strain Table
Position Strand Gene LocusTag Fraction 3 days starvation remove 965,230 + thiG DvMF_0800 0.70 -1.6 965,238 + thiG DvMF_0800 0.71 -1.5 965,297 + thiG DvMF_0800 0.79 -1.6 965,317 + thiG DvMF_0800 0.81 -1.8 965,348 - thiG DvMF_0800 0.85 -2.9 965,356 + thiG DvMF_0800 0.86 -3.0 965,356 + thiG DvMF_0800 0.86 -2.1 965,493 - DvMF_0801 0.13 -3.7 965,525 + DvMF_0801 0.29 -3.0 965,542 - DvMF_0801 0.37 -2.0 965,997 + -1.2 966,383 + DvMF_0802 0.22 -0.2 966,561 - DvMF_0802 0.35 -0.6 966,786 + DvMF_0802 0.52 +0.6 966,810 - DvMF_0802 0.54 -1.1 967,030 + DvMF_0802 0.71 -1.1 967,030 + DvMF_0802 0.71 -0.5 967,038 - DvMF_0802 0.72 -0.9 967,048 + DvMF_0802 0.73 -0.4 967,056 - DvMF_0802 0.73 -0.6 967,139 - DvMF_0802 0.80 -0.4 967,156 - DvMF_0802 0.81 +1.3 967,181 - DvMF_0802 0.83 -0.5 967,205 - DvMF_0802 0.85 -0.9 967,210 - DvMF_0802 0.85 -0.0 967,343 - -0.3 967,377 - -0.2 967,681 + DvMF_0803 0.16 -1.0 967,694 + DvMF_0803 0.16 -1.0 967,735 + DvMF_0803 0.19 -0.2 967,735 + DvMF_0803 0.19 -0.6 967,743 - DvMF_0803 0.19 -0.9 967,868 - DvMF_0803 0.27 -0.8 967,917 + DvMF_0803 0.29 -0.9 967,933 - DvMF_0803 0.30 -0.3 967,982 - DvMF_0803 0.33 -0.6 968,119 - DvMF_0803 0.41 +0.2 968,164 + DvMF_0803 0.44 -0.2 968,251 - DvMF_0803 0.49 +0.3 968,360 - DvMF_0803 0.55 -0.0 968,379 + DvMF_0803 0.56 -0.8
Or see this region's nucleotide sequence