Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0721

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0718 and DvMF_0719 are separated by 2 nucleotidesDvMF_0719 and DvMF_0720 overlap by 14 nucleotidesDvMF_0720 and DvMF_0721 overlap by 4 nucleotidesDvMF_0721 and DvMF_0722 are separated by 942 nucleotides DvMF_0718: DvMF_0718 - hypothetical protein (RefSeq), at 870,322 to 870,774 _0718 DvMF_0719: DvMF_0719 - hypothetical protein (RefSeq), at 870,777 to 871,001 _0719 DvMF_0720: DvMF_0720 - protein of unknown function DUF1018 (RefSeq), at 870,988 to 871,428 _0720 DvMF_0721: DvMF_0721 - Mor transcription activator domain protein (RefSeq), at 871,425 to 871,895 _0721 DvMF_0722: DvMF_0722 - phage-related membrane protein (RefSeq), at 872,838 to 873,209 _0722 Position (kb) 871 872Strain fitness (log2 ratio) -1 0 1 2at 870.652 kb on - strand, within DvMF_0718at 870.772 kb on - strandat 870.794 kb on + strandat 871.108 kb on + strand, within DvMF_0720at 871.185 kb on + strand, within DvMF_0720at 871.190 kb on + strand, within DvMF_0720at 871.619 kb on + strand, within DvMF_0721at 872.070 kb on + strandat 872.734 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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870,652 - DvMF_0718 0.73 +0.2
870,772 - -1.4
870,794 + -1.4
871,108 + DvMF_0720 0.27 -0.7
871,185 + DvMF_0720 0.45 -0.5
871,190 + DvMF_0720 0.46 +2.3
871,619 + DvMF_0721 0.41 -0.2
872,070 + -1.0
872,734 + -0.9

Or see this region's nucleotide sequence