Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0372

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0371 and DvMF_0372 are separated by 119 nucleotidesDvMF_0372 and DvMF_0373 are separated by 37 nucleotidesDvMF_0373 and engB are separated by 251 nucleotides DvMF_0371: DvMF_0371 - cell divisionFtsK/SpoIIIE (RefSeq), at 436,601 to 439,333 _0371 DvMF_0372: DvMF_0372 - translation elongation factor P (RefSeq), at 439,453 to 440,010 _0372 DvMF_0373: DvMF_0373 - 3-dehydroquinate dehydratase (RefSeq), at 440,048 to 440,527 _0373 DvMF_0374: engB - ribosome biogenesis GTP-binding protein YsxC (RefSeq), at 440,779 to 441,543 engB Position (kb) 439 440 441Strain fitness (log2 ratio) -1 0 1 2at 439.428 kb on + strandat 439.638 kb on + strand, within DvMF_0372at 439.902 kb on + strand, within DvMF_0372

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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439,428 + +2.7
439,638 + DvMF_0372 0.33 -1.0
439,902 + DvMF_0372 0.80 -1.6

Or see this region's nucleotide sequence