Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0206

Experiment: 3 days starvation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0204 and DvMF_0205 are separated by 39 nucleotidesDvMF_0205 and DvMF_0206 are separated by 85 nucleotidesDvMF_0206 and DvMF_0207 are separated by 240 nucleotides DvMF_0204: DvMF_0204 - hypothetical protein (RefSeq), at 222,839 to 223,672 _0204 DvMF_0205: DvMF_0205 - hypothetical protein (RefSeq), at 223,712 to 224,239 _0205 DvMF_0206: DvMF_0206 - hypothetical protein (RefSeq), at 224,325 to 225,326 _0206 DvMF_0207: DvMF_0207 - thiamine biosynthesis protein ThiC (RefSeq), at 225,567 to 226,856 _0207 Position (kb) 224 225 226Strain fitness (log2 ratio) -2 -1 0 1 2at 223.346 kb on + strand, within DvMF_0204at 223.371 kb on + strand, within DvMF_0204at 223.448 kb on + strand, within DvMF_0204at 223.556 kb on + strand, within DvMF_0204at 223.767 kb on - strand, within DvMF_0205at 224.064 kb on - strand, within DvMF_0205at 225.039 kb on + strand, within DvMF_0206at 225.291 kb on - strandat 225.333 kb on + strandat 225.842 kb on + strand, within DvMF_0207at 226.046 kb on + strand, within DvMF_0207

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Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
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223,346 + DvMF_0204 0.61 -0.7
223,371 + DvMF_0204 0.64 -0.6
223,448 + DvMF_0204 0.73 -0.2
223,556 + DvMF_0204 0.86 -0.4
223,767 - DvMF_0205 0.10 +2.4
224,064 - DvMF_0205 0.67 +0.1
225,039 + DvMF_0206 0.71 -0.0
225,291 - +0.2
225,333 + +0.3
225,842 + DvMF_0207 0.21 -2.5
226,046 + DvMF_0207 0.37 -1.7

Or see this region's nucleotide sequence