Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0037

Experiment: 3 days starvation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0036 and DvMF_0037 are separated by 2 nucleotidesDvMF_0037 and DvMF_0038 are separated by 126 nucleotides DvMF_0036: DvMF_0036 - transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq), at 46,313 to 49,459 _0036 DvMF_0037: DvMF_0037 - hypothetical protein (RefSeq), at 49,462 to 50,142 _0037 DvMF_0038: DvMF_0038 - protein of unknown function DUF140 (RefSeq), at 50,269 to 51,414 _0038 Position (kb) 49 50 51Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.462 kb on - strand, within DvMF_0036at 48.496 kb on - strand, within DvMF_0036at 48.496 kb on - strand, within DvMF_0036at 48.513 kb on - strand, within DvMF_0036at 48.529 kb on - strand, within DvMF_0036at 48.529 kb on - strand, within DvMF_0036at 48.546 kb on - strand, within DvMF_0036at 48.546 kb on - strand, within DvMF_0036at 48.937 kb on - strand, within DvMF_0036at 49.459 kb on + strandat 49.531 kb on + strand, within DvMF_0037at 49.600 kb on + strand, within DvMF_0037at 49.644 kb on + strand, within DvMF_0037at 49.660 kb on + strand, within DvMF_0037at 49.709 kb on - strand, within DvMF_0037at 49.822 kb on - strand, within DvMF_0037at 49.836 kb on + strand, within DvMF_0037at 49.860 kb on + strand, within DvMF_0037at 49.946 kb on - strand, within DvMF_0037at 50.114 kb on + strandat 50.548 kb on + strand, within DvMF_0038at 50.574 kb on - strand, within DvMF_0038at 50.579 kb on - strand, within DvMF_0038at 50.650 kb on + strand, within DvMF_0038at 50.661 kb on + strand, within DvMF_0038at 50.669 kb on - strand, within DvMF_0038at 50.680 kb on + strand, within DvMF_0038at 50.683 kb on - strand, within DvMF_0038at 50.688 kb on - strand, within DvMF_0038at 50.758 kb on + strand, within DvMF_0038at 50.766 kb on + strand, within DvMF_0038at 50.794 kb on - strand, within DvMF_0038at 50.833 kb on + strand, within DvMF_0038at 50.836 kb on - strand, within DvMF_0038at 50.862 kb on - strand, within DvMF_0038at 50.862 kb on - strand, within DvMF_0038at 50.880 kb on + strand, within DvMF_0038at 50.995 kb on + strand, within DvMF_0038at 51.037 kb on - strand, within DvMF_0038at 51.117 kb on + strand, within DvMF_0038at 51.118 kb on - strand, within DvMF_0038

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 3 days starvation
remove
48,462 - DvMF_0036 0.68 +0.0
48,496 - DvMF_0036 0.69 -0.9
48,496 - DvMF_0036 0.69 -0.5
48,513 - DvMF_0036 0.70 -0.5
48,529 - DvMF_0036 0.70 -3.5
48,529 - DvMF_0036 0.70 +0.0
48,546 - DvMF_0036 0.71 -1.1
48,546 - DvMF_0036 0.71 -0.1
48,937 - DvMF_0036 0.83 -0.0
49,459 + -0.5
49,531 + DvMF_0037 0.10 -0.2
49,600 + DvMF_0037 0.20 -0.6
49,644 + DvMF_0037 0.27 -0.5
49,660 + DvMF_0037 0.29 -1.1
49,709 - DvMF_0037 0.36 -1.0
49,822 - DvMF_0037 0.53 -1.3
49,836 + DvMF_0037 0.55 -1.0
49,860 + DvMF_0037 0.58 -0.7
49,946 - DvMF_0037 0.71 -0.0
50,114 + +0.2
50,548 + DvMF_0038 0.24 -0.4
50,574 - DvMF_0038 0.27 +0.3
50,579 - DvMF_0038 0.27 -0.5
50,650 + DvMF_0038 0.33 -0.9
50,661 + DvMF_0038 0.34 -1.3
50,669 - DvMF_0038 0.35 -0.6
50,680 + DvMF_0038 0.36 +0.0
50,683 - DvMF_0038 0.36 -1.1
50,688 - DvMF_0038 0.37 -0.3
50,758 + DvMF_0038 0.43 -0.5
50,766 + DvMF_0038 0.43 -0.8
50,794 - DvMF_0038 0.46 -0.1
50,833 + DvMF_0038 0.49 -0.7
50,836 - DvMF_0038 0.49 -0.3
50,862 - DvMF_0038 0.52 -1.4
50,862 - DvMF_0038 0.52 +0.5
50,880 + DvMF_0038 0.53 -0.1
50,995 + DvMF_0038 0.63 -2.0
51,037 - DvMF_0038 0.67 -0.5
51,117 + DvMF_0038 0.74 -1.3
51,118 - DvMF_0038 0.74 -1.4

Or see this region's nucleotide sequence