Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3900 and Shewana3_3901 are separated by 64 nucleotides Shewana3_3901 and Shewana3_3902 are separated by 92 nucleotides
Shewana3_3900: Shewana3_3900 - 1A family penicillin-binding protein (RefSeq), at 4,678,503 to 4,681,022
_3900
Shewana3_3901: Shewana3_3901 - argininosuccinate lyase (RefSeq), at 4,681,087 to 4,682,454
_3901
Shewana3_3902: Shewana3_3902 - argininosuccinate synthase (RefSeq), at 4,682,547 to 4,683,770
_3902
Position (kb)
4681
4682
4683 Strain fitness (log2 ratio)
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 4680.968 kb on - strand at 4681.212 kb on + strand at 4681.234 kb on - strand, within Shewana3_3901 at 4681.236 kb on + strand, within Shewana3_3901 at 4681.783 kb on + strand, within Shewana3_3901 at 4681.829 kb on - strand, within Shewana3_3901 at 4681.920 kb on - strand, within Shewana3_3901 at 4682.256 kb on + strand, within Shewana3_3901 at 4682.359 kb on - strand at 4682.385 kb on + strand at 4682.412 kb on + strand at 4682.455 kb on + strand at 4682.475 kb on + strand at 4682.576 kb on - strand at 4682.761 kb on - strand, within Shewana3_3902 at 4682.990 kb on + strand, within Shewana3_3902 at 4683.066 kb on + strand, within Shewana3_3902 at 4683.079 kb on - strand, within Shewana3_3902 at 4683.143 kb on - strand, within Shewana3_3902 at 4683.273 kb on - strand, within Shewana3_3902 at 4683.394 kb on + strand, within Shewana3_3902 at 4683.404 kb on + strand, within Shewana3_3902
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,680,968 - +2.4 4,681,212 + -7.1 4,681,234 - Shewana3_3901 0.11 -5.2 4,681,236 + Shewana3_3901 0.11 -5.2 4,681,783 + Shewana3_3901 0.51 -6.0 4,681,829 - Shewana3_3901 0.54 -6.1 4,681,920 - Shewana3_3901 0.61 -6.3 4,682,256 + Shewana3_3901 0.85 -5.7 4,682,359 - -4.4 4,682,385 + -7.5 4,682,412 + -7.1 4,682,455 + -4.3 4,682,475 + -4.5 4,682,576 - -4.3 4,682,761 - Shewana3_3902 0.17 -5.0 4,682,990 + Shewana3_3902 0.36 -3.5 4,683,066 + Shewana3_3902 0.42 -3.0 4,683,079 - Shewana3_3902 0.43 -6.3 4,683,143 - Shewana3_3902 0.49 -6.1 4,683,273 - Shewana3_3902 0.59 -4.1 4,683,394 + Shewana3_3902 0.69 -6.8 4,683,404 + Shewana3_3902 0.70 -5.1
Or see this region's nucleotide sequence