Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3817

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3815 and Shewana3_3816 are separated by 176 nucleotidesShewana3_3816 and Shewana3_3817 are separated by 83 nucleotidesShewana3_3817 and Shewana3_3818 overlap by 1 nucleotidesShewana3_3818 and Shewana3_3819 are separated by 5 nucleotides Shewana3_3815: Shewana3_3815 - CaCA family Na(+)/Ca(+) antiporter (RefSeq), at 4,582,169 to 4,583,119 _3815 Shewana3_3816: Shewana3_3816 - TPR repeat-containing protein (RefSeq), at 4,583,296 to 4,584,000 _3816 Shewana3_3817: Shewana3_3817 - putative signal transduction histidine kinase (RefSeq), at 4,584,084 to 4,585,163 _3817 Shewana3_3818: Shewana3_3818 - two component LuxR family transcriptional regulator (RefSeq), at 4,585,163 to 4,585,759 _3818 Shewana3_3819: Shewana3_3819 - hypothetical protein (RefSeq), at 4,585,765 to 4,586,880 _3819 Position (kb) 4584 4585 4586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4583.326 kb on + strandat 4583.466 kb on - strand, within Shewana3_3816at 4583.531 kb on - strand, within Shewana3_3816at 4583.838 kb on - strand, within Shewana3_3816at 4584.095 kb on - strandat 4584.439 kb on + strand, within Shewana3_3817at 4584.439 kb on + strand, within Shewana3_3817at 4584.577 kb on - strand, within Shewana3_3817at 4584.782 kb on - strand, within Shewana3_3817at 4585.100 kb on - strandat 4585.116 kb on + strandat 4585.218 kb on + strandat 4585.225 kb on - strand, within Shewana3_3818at 4585.225 kb on - strand, within Shewana3_3818at 4585.271 kb on + strand, within Shewana3_3818at 4585.271 kb on + strand, within Shewana3_3818at 4585.348 kb on + strand, within Shewana3_3818at 4585.348 kb on - strand, within Shewana3_3818at 4585.418 kb on + strand, within Shewana3_3818at 4585.752 kb on + strandat 4585.807 kb on + strandat 4585.807 kb on + strandat 4585.873 kb on - strandat 4585.873 kb on - strandat 4585.873 kb on - strandat 4585.873 kb on - strandat 4586.084 kb on - strand, within Shewana3_3819

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,583,326 + -1.0
4,583,466 - Shewana3_3816 0.24 -2.1
4,583,531 - Shewana3_3816 0.33 -0.7
4,583,838 - Shewana3_3816 0.77 +0.7
4,584,095 - +0.5
4,584,439 + Shewana3_3817 0.33 +0.1
4,584,439 + Shewana3_3817 0.33 -1.7
4,584,577 - Shewana3_3817 0.46 +0.7
4,584,782 - Shewana3_3817 0.65 +2.3
4,585,100 - +0.1
4,585,116 + +0.1
4,585,218 + +0.6
4,585,225 - Shewana3_3818 0.10 -1.1
4,585,225 - Shewana3_3818 0.10 +0.7
4,585,271 + Shewana3_3818 0.18 +0.0
4,585,271 + Shewana3_3818 0.18 -1.5
4,585,348 + Shewana3_3818 0.31 +0.5
4,585,348 - Shewana3_3818 0.31 -1.7
4,585,418 + Shewana3_3818 0.43 -3.4
4,585,752 + +0.5
4,585,807 + +1.2
4,585,807 + +0.5
4,585,873 - +0.2
4,585,873 - -0.3
4,585,873 - +0.2
4,585,873 - -1.7
4,586,084 - Shewana3_3819 0.29 +0.2

Or see this region's nucleotide sequence