Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3815 and Shewana3_3816 are separated by 176 nucleotides Shewana3_3816 and Shewana3_3817 are separated by 83 nucleotides Shewana3_3817 and Shewana3_3818 overlap by 1 nucleotides Shewana3_3818 and Shewana3_3819 are separated by 5 nucleotides
Shewana3_3815: Shewana3_3815 - CaCA family Na(+)/Ca(+) antiporter (RefSeq), at 4,582,169 to 4,583,119
_3815
Shewana3_3816: Shewana3_3816 - TPR repeat-containing protein (RefSeq), at 4,583,296 to 4,584,000
_3816
Shewana3_3817: Shewana3_3817 - putative signal transduction histidine kinase (RefSeq), at 4,584,084 to 4,585,163
_3817
Shewana3_3818: Shewana3_3818 - two component LuxR family transcriptional regulator (RefSeq), at 4,585,163 to 4,585,759
_3818
Shewana3_3819: Shewana3_3819 - hypothetical protein (RefSeq), at 4,585,765 to 4,586,880
_3819
Position (kb)
4584
4585
4586 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4583.326 kb on + strand at 4583.466 kb on - strand, within Shewana3_3816 at 4583.531 kb on - strand, within Shewana3_3816 at 4583.838 kb on - strand, within Shewana3_3816 at 4584.095 kb on - strand at 4584.439 kb on + strand, within Shewana3_3817 at 4584.439 kb on + strand, within Shewana3_3817 at 4584.577 kb on - strand, within Shewana3_3817 at 4584.782 kb on - strand, within Shewana3_3817 at 4585.100 kb on - strand at 4585.116 kb on + strand at 4585.218 kb on + strand at 4585.225 kb on - strand, within Shewana3_3818 at 4585.225 kb on - strand, within Shewana3_3818 at 4585.271 kb on + strand, within Shewana3_3818 at 4585.271 kb on + strand, within Shewana3_3818 at 4585.348 kb on + strand, within Shewana3_3818 at 4585.348 kb on - strand, within Shewana3_3818 at 4585.418 kb on + strand, within Shewana3_3818 at 4585.752 kb on + strand at 4585.807 kb on + strand at 4585.807 kb on + strand at 4585.873 kb on - strand at 4585.873 kb on - strand at 4585.873 kb on - strand at 4585.873 kb on - strand at 4586.084 kb on - strand, within Shewana3_3819
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 4,583,326 + -1.0 4,583,466 - Shewana3_3816 0.24 -2.1 4,583,531 - Shewana3_3816 0.33 -0.7 4,583,838 - Shewana3_3816 0.77 +0.7 4,584,095 - +0.5 4,584,439 + Shewana3_3817 0.33 +0.1 4,584,439 + Shewana3_3817 0.33 -1.7 4,584,577 - Shewana3_3817 0.46 +0.7 4,584,782 - Shewana3_3817 0.65 +2.3 4,585,100 - +0.1 4,585,116 + +0.1 4,585,218 + +0.6 4,585,225 - Shewana3_3818 0.10 -1.1 4,585,225 - Shewana3_3818 0.10 +0.7 4,585,271 + Shewana3_3818 0.18 +0.0 4,585,271 + Shewana3_3818 0.18 -1.5 4,585,348 + Shewana3_3818 0.31 +0.5 4,585,348 - Shewana3_3818 0.31 -1.7 4,585,418 + Shewana3_3818 0.43 -3.4 4,585,752 + +0.5 4,585,807 + +1.2 4,585,807 + +0.5 4,585,873 - +0.2 4,585,873 - -0.3 4,585,873 - +0.2 4,585,873 - -1.7 4,586,084 - Shewana3_3819 0.29 +0.2
Or see this region's nucleotide sequence