Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3704

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3703 and Shewana3_3704 are separated by 541 nucleotidesShewana3_3704 and Shewana3_3705 are separated by 26 nucleotidesShewana3_3705 and Shewana3_3706 are separated by 40 nucleotides Shewana3_3703: Shewana3_3703 - hypothetical protein (RefSeq), at 4,444,328 to 4,445,383 _3703 Shewana3_3704: Shewana3_3704 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 4,445,925 to 4,447,502 _3704 Shewana3_3705: Shewana3_3705 - C factor cell-cell signaling protein (RefSeq), at 4,447,529 to 4,448,239 _3705 Shewana3_3706: Shewana3_3706 - hypothetical protein (RefSeq), at 4,448,280 to 4,448,756 _3706 Position (kb) 4445 4446 4447 4448Strain fitness (log2 ratio) -2 -1 0 1at 4445.021 kb on - strand, within Shewana3_3703at 4445.105 kb on + strand, within Shewana3_3703at 4445.144 kb on + strand, within Shewana3_3703at 4445.152 kb on - strand, within Shewana3_3703at 4445.275 kb on + strand, within Shewana3_3703at 4445.275 kb on + strand, within Shewana3_3703at 4445.275 kb on + strand, within Shewana3_3703at 4445.326 kb on + strandat 4445.355 kb on + strandat 4445.362 kb on - strandat 4445.395 kb on + strandat 4445.411 kb on - strandat 4445.411 kb on - strandat 4445.418 kb on + strandat 4445.736 kb on + strandat 4445.872 kb on + strandat 4445.996 kb on + strandat 4445.996 kb on + strandat 4446.004 kb on - strandat 4446.197 kb on - strand, within Shewana3_3704at 4446.198 kb on - strand, within Shewana3_3704at 4446.219 kb on + strand, within Shewana3_3704at 4446.324 kb on + strand, within Shewana3_3704at 4446.401 kb on - strand, within Shewana3_3704at 4446.411 kb on - strand, within Shewana3_3704at 4446.411 kb on - strand, within Shewana3_3704at 4446.472 kb on + strand, within Shewana3_3704at 4446.630 kb on + strand, within Shewana3_3704at 4446.638 kb on - strand, within Shewana3_3704at 4446.744 kb on + strand, within Shewana3_3704at 4446.981 kb on - strand, within Shewana3_3704at 4447.239 kb on - strand, within Shewana3_3704at 4447.239 kb on - strand, within Shewana3_3704at 4447.437 kb on - strandat 4447.565 kb on + strandat 4447.573 kb on - strandat 4447.633 kb on + strand, within Shewana3_3705at 4447.691 kb on - strand, within Shewana3_3705at 4447.740 kb on + strand, within Shewana3_3705at 4447.749 kb on + strand, within Shewana3_3705at 4447.760 kb on + strand, within Shewana3_3705at 4447.760 kb on - strand, within Shewana3_3705at 4447.873 kb on + strand, within Shewana3_3705at 4447.979 kb on - strand, within Shewana3_3705at 4448.174 kb on - strandat 4448.276 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,445,021 - Shewana3_3703 0.66 -0.1
4,445,105 + Shewana3_3703 0.74 +0.0
4,445,144 + Shewana3_3703 0.77 +0.2
4,445,152 - Shewana3_3703 0.78 -1.7
4,445,275 + Shewana3_3703 0.90 +0.1
4,445,275 + Shewana3_3703 0.90 +0.3
4,445,275 + Shewana3_3703 0.90 -0.1
4,445,326 + -0.0
4,445,355 + +0.8
4,445,362 - +1.0
4,445,395 + -0.8
4,445,411 - +1.0
4,445,411 - +0.2
4,445,418 + +0.1
4,445,736 + -0.2
4,445,872 + +0.2
4,445,996 + +0.2
4,445,996 + +1.0
4,446,004 - -0.4
4,446,197 - Shewana3_3704 0.17 +0.1
4,446,198 - Shewana3_3704 0.17 +0.3
4,446,219 + Shewana3_3704 0.19 +0.2
4,446,324 + Shewana3_3704 0.25 +0.6
4,446,401 - Shewana3_3704 0.30 +0.4
4,446,411 - Shewana3_3704 0.31 +0.4
4,446,411 - Shewana3_3704 0.31 -1.4
4,446,472 + Shewana3_3704 0.35 +0.0
4,446,630 + Shewana3_3704 0.45 +0.3
4,446,638 - Shewana3_3704 0.45 +0.2
4,446,744 + Shewana3_3704 0.52 +0.4
4,446,981 - Shewana3_3704 0.67 +0.5
4,447,239 - Shewana3_3704 0.83 +0.0
4,447,239 - Shewana3_3704 0.83 +0.8
4,447,437 - -2.2
4,447,565 + -2.2
4,447,573 - -0.8
4,447,633 + Shewana3_3705 0.15 -1.3
4,447,691 - Shewana3_3705 0.23 -0.1
4,447,740 + Shewana3_3705 0.30 +1.2
4,447,749 + Shewana3_3705 0.31 -0.1
4,447,760 + Shewana3_3705 0.32 +0.8
4,447,760 - Shewana3_3705 0.32 +0.3
4,447,873 + Shewana3_3705 0.48 -2.4
4,447,979 - Shewana3_3705 0.63 +0.7
4,448,174 - +0.3
4,448,276 + +0.5

Or see this region's nucleotide sequence