Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3429

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3428 and Shewana3_3429 are separated by 241 nucleotidesShewana3_3429 and Shewana3_3430 overlap by 4 nucleotides Shewana3_3428: Shewana3_3428 - hypothetical protein (RefSeq), at 4,103,707 to 4,105,332 _3428 Shewana3_3429: Shewana3_3429 - NapD family protein (RefSeq), at 4,105,574 to 4,105,843 _3429 Shewana3_3430: Shewana3_3430 - nitrate reductase catalytic subunit (RefSeq), at 4,105,840 to 4,108,320 _3430 Position (kb) 4105 4106Strain fitness (log2 ratio) -2 -1 0 1at 4104.621 kb on + strand, within Shewana3_3428at 4104.987 kb on + strand, within Shewana3_3428at 4105.046 kb on - strand, within Shewana3_3428at 4105.153 kb on + strand, within Shewana3_3428at 4105.153 kb on + strand, within Shewana3_3428at 4105.345 kb on + strandat 4105.345 kb on + strandat 4105.490 kb on + strandat 4105.490 kb on + strandat 4105.498 kb on - strandat 4105.636 kb on + strand, within Shewana3_3429at 4105.746 kb on + strand, within Shewana3_3429at 4105.805 kb on + strand, within Shewana3_3429at 4105.957 kb on - strandat 4106.078 kb on + strandat 4106.086 kb on - strandat 4106.243 kb on + strand, within Shewana3_3430at 4106.250 kb on + strand, within Shewana3_3430at 4106.422 kb on + strand, within Shewana3_3430at 4106.634 kb on - strand, within Shewana3_3430at 4106.760 kb on - strand, within Shewana3_3430at 4106.796 kb on + strand, within Shewana3_3430

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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4,104,621 + Shewana3_3428 0.56 -2.6
4,104,987 + Shewana3_3428 0.79 -1.2
4,105,046 - Shewana3_3428 0.82 -0.9
4,105,153 + Shewana3_3428 0.89 -0.4
4,105,153 + Shewana3_3428 0.89 +0.2
4,105,345 + -1.1
4,105,345 + +0.2
4,105,490 + -0.1
4,105,490 + -1.6
4,105,498 - +0.9
4,105,636 + Shewana3_3429 0.23 +0.1
4,105,746 + Shewana3_3429 0.64 -2.2
4,105,805 + Shewana3_3429 0.86 -0.2
4,105,957 - +0.2
4,106,078 + -0.8
4,106,086 - -0.6
4,106,243 + Shewana3_3430 0.16 +1.5
4,106,250 + Shewana3_3430 0.17 -0.1
4,106,422 + Shewana3_3430 0.23 +0.5
4,106,634 - Shewana3_3430 0.32 +0.2
4,106,760 - Shewana3_3430 0.37 -1.7
4,106,796 + Shewana3_3430 0.39 +0.3

Or see this region's nucleotide sequence