Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3303 and Shewana3_3304 are separated by 674 nucleotides Shewana3_3304 and Shewana3_3305 are separated by 292 nucleotides
Shewana3_3303: Shewana3_3303 - integrase catalytic subunit (RefSeq), at 3,961,055 to 3,961,774
_3303
Shewana3_3304: Shewana3_3304 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 3,962,449 to 3,967,569
_3304
Shewana3_3305: Shewana3_3305 - MltA-interacting MipA family protein (RefSeq), at 3,967,862 to 3,968,704
_3305
Position (kb)
3962
3963
3964
3965
3966
3967
3968 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3961.815 kb on + strand at 3961.820 kb on + strand at 3961.823 kb on - strand at 3961.858 kb on + strand at 3961.884 kb on - strand at 3961.933 kb on - strand at 3961.933 kb on - strand at 3962.017 kb on + strand at 3962.153 kb on + strand at 3962.183 kb on - strand at 3962.194 kb on + strand at 3962.194 kb on + strand at 3962.194 kb on + strand at 3962.481 kb on + strand at 3962.575 kb on - strand at 3962.599 kb on + strand at 3962.669 kb on + strand at 3962.779 kb on - strand at 3962.794 kb on - strand at 3962.855 kb on - strand at 3962.871 kb on + strand at 3962.871 kb on + strand at 3962.951 kb on + strand at 3962.997 kb on + strand, within Shewana3_3304 at 3963.006 kb on - strand, within Shewana3_3304 at 3963.104 kb on - strand, within Shewana3_3304 at 3963.316 kb on - strand, within Shewana3_3304 at 3963.316 kb on - strand, within Shewana3_3304 at 3963.635 kb on - strand, within Shewana3_3304 at 3963.740 kb on - strand, within Shewana3_3304 at 3963.768 kb on + strand, within Shewana3_3304 at 3963.836 kb on - strand, within Shewana3_3304 at 3963.957 kb on - strand, within Shewana3_3304 at 3963.960 kb on - strand, within Shewana3_3304 at 3964.023 kb on - strand, within Shewana3_3304 at 3964.090 kb on - strand, within Shewana3_3304 at 3964.133 kb on - strand, within Shewana3_3304 at 3964.384 kb on + strand, within Shewana3_3304 at 3964.418 kb on - strand, within Shewana3_3304 at 3964.636 kb on - strand, within Shewana3_3304 at 3964.886 kb on - strand, within Shewana3_3304 at 3965.333 kb on + strand, within Shewana3_3304 at 3965.341 kb on - strand, within Shewana3_3304 at 3965.707 kb on + strand, within Shewana3_3304 at 3965.778 kb on - strand, within Shewana3_3304 at 3966.042 kb on - strand, within Shewana3_3304 at 3966.274 kb on - strand, within Shewana3_3304 at 3966.387 kb on + strand, within Shewana3_3304 at 3966.389 kb on - strand, within Shewana3_3304 at 3966.424 kb on + strand, within Shewana3_3304 at 3966.479 kb on + strand, within Shewana3_3304 at 3966.498 kb on + strand, within Shewana3_3304 at 3966.506 kb on - strand, within Shewana3_3304 at 3966.506 kb on - strand, within Shewana3_3304 at 3966.567 kb on + strand, within Shewana3_3304 at 3966.622 kb on - strand, within Shewana3_3304 at 3966.657 kb on + strand, within Shewana3_3304 at 3966.693 kb on + strand, within Shewana3_3304 at 3966.734 kb on - strand, within Shewana3_3304 at 3967.154 kb on + strand at 3967.215 kb on + strand at 3967.469 kb on + strand at 3967.501 kb on - strand at 3967.520 kb on + strand at 3967.520 kb on + strand at 3967.611 kb on + strand at 3967.611 kb on + strand at 3967.619 kb on - strand at 3967.832 kb on + strand at 3967.901 kb on + strand at 3968.153 kb on - strand, within Shewana3_3305 at 3968.153 kb on - strand, within Shewana3_3305 at 3968.153 kb on - strand, within Shewana3_3305 at 3968.198 kb on - strand, within Shewana3_3305 at 3968.386 kb on + strand, within Shewana3_3305 at 3968.430 kb on + strand, within Shewana3_3305 at 3968.457 kb on + strand, within Shewana3_3305 at 3968.478 kb on + strand, within Shewana3_3305 at 3968.486 kb on - strand, within Shewana3_3305
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,961,815 + -1.2 3,961,820 + +0.6 3,961,823 - -0.1 3,961,858 + +0.4 3,961,884 - -1.1 3,961,933 - -0.5 3,961,933 - -0.2 3,962,017 + +0.1 3,962,153 + -1.6 3,962,183 - +0.7 3,962,194 + +0.1 3,962,194 + +0.3 3,962,194 + -1.8 3,962,481 + +0.3 3,962,575 - +0.3 3,962,599 + -1.6 3,962,669 + +0.1 3,962,779 - -0.4 3,962,794 - -0.3 3,962,855 - +0.9 3,962,871 + +0.6 3,962,871 + +0.2 3,962,951 + +0.3 3,962,997 + Shewana3_3304 0.11 +0.7 3,963,006 - Shewana3_3304 0.11 +0.1 3,963,104 - Shewana3_3304 0.13 -0.4 3,963,316 - Shewana3_3304 0.17 +0.2 3,963,316 - Shewana3_3304 0.17 -0.0 3,963,635 - Shewana3_3304 0.23 +0.1 3,963,740 - Shewana3_3304 0.25 -2.1 3,963,768 + Shewana3_3304 0.26 +1.0 3,963,836 - Shewana3_3304 0.27 +0.7 3,963,957 - Shewana3_3304 0.29 -1.1 3,963,960 - Shewana3_3304 0.30 +0.1 3,964,023 - Shewana3_3304 0.31 +0.7 3,964,090 - Shewana3_3304 0.32 +0.4 3,964,133 - Shewana3_3304 0.33 -1.4 3,964,384 + Shewana3_3304 0.38 -1.2 3,964,418 - Shewana3_3304 0.38 +0.2 3,964,636 - Shewana3_3304 0.43 +0.9 3,964,886 - Shewana3_3304 0.48 +0.7 3,965,333 + Shewana3_3304 0.56 +0.6 3,965,341 - Shewana3_3304 0.56 -0.1 3,965,707 + Shewana3_3304 0.64 +0.0 3,965,778 - Shewana3_3304 0.65 -1.8 3,966,042 - Shewana3_3304 0.70 +0.6 3,966,274 - Shewana3_3304 0.75 +0.4 3,966,387 + Shewana3_3304 0.77 +0.9 3,966,389 - Shewana3_3304 0.77 +0.2 3,966,424 + Shewana3_3304 0.78 +0.6 3,966,479 + Shewana3_3304 0.79 -1.4 3,966,498 + Shewana3_3304 0.79 -3.8 3,966,506 - Shewana3_3304 0.79 +0.5 3,966,506 - Shewana3_3304 0.79 +0.3 3,966,567 + Shewana3_3304 0.80 +0.3 3,966,622 - Shewana3_3304 0.81 +0.6 3,966,657 + Shewana3_3304 0.82 +0.2 3,966,693 + Shewana3_3304 0.83 +0.2 3,966,734 - Shewana3_3304 0.84 -1.4 3,967,154 + -4.9 3,967,215 + -0.3 3,967,469 + +0.4 3,967,501 - +0.3 3,967,520 + -1.7 3,967,520 + +0.4 3,967,611 + +0.2 3,967,611 + +0.2 3,967,619 - +0.4 3,967,832 + +0.1 3,967,901 + +0.3 3,968,153 - Shewana3_3305 0.35 +0.1 3,968,153 - Shewana3_3305 0.35 -1.2 3,968,153 - Shewana3_3305 0.35 -4.8 3,968,198 - Shewana3_3305 0.40 +0.1 3,968,386 + Shewana3_3305 0.62 -1.6 3,968,430 + Shewana3_3305 0.67 +0.4 3,968,457 + Shewana3_3305 0.71 -2.8 3,968,478 + Shewana3_3305 0.73 +0.9 3,968,486 - Shewana3_3305 0.74 +0.3
Or see this region's nucleotide sequence