Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3145

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3144 and Shewana3_3145 are separated by 430 nucleotidesShewana3_3145 and Shewana3_3146 are separated by 239 nucleotides Shewana3_3144: Shewana3_3144 - amino acid carrier protein (RefSeq), at 3,769,478 to 3,770,944 _3144 Shewana3_3145: Shewana3_3145 - putative phosphoketolase (RefSeq), at 3,771,375 to 3,773,741 _3145 Shewana3_3146: Shewana3_3146 - OmpA/MotB domain-containing protein (RefSeq), at 3,773,981 to 3,775,102 _3146 Position (kb) 3771 3772 3773 3774Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3770.386 kb on - strand, within Shewana3_3144at 3770.461 kb on - strand, within Shewana3_3144at 3770.471 kb on - strand, within Shewana3_3144at 3770.530 kb on - strand, within Shewana3_3144at 3770.631 kb on + strand, within Shewana3_3144at 3770.729 kb on - strand, within Shewana3_3144at 3770.806 kb on + strandat 3770.814 kb on - strandat 3770.901 kb on + strandat 3770.909 kb on - strandat 3770.989 kb on - strandat 3771.097 kb on - strandat 3771.097 kb on - strandat 3771.158 kb on + strandat 3771.161 kb on - strandat 3771.206 kb on - strandat 3771.328 kb on + strandat 3771.351 kb on - strandat 3771.367 kb on + strandat 3771.524 kb on - strandat 3771.529 kb on - strandat 3771.539 kb on + strandat 3771.618 kb on - strand, within Shewana3_3145at 3771.641 kb on - strand, within Shewana3_3145at 3771.746 kb on - strand, within Shewana3_3145at 3771.785 kb on - strand, within Shewana3_3145at 3771.816 kb on + strand, within Shewana3_3145at 3771.816 kb on + strand, within Shewana3_3145at 3771.834 kb on + strand, within Shewana3_3145at 3771.834 kb on + strand, within Shewana3_3145at 3771.842 kb on - strand, within Shewana3_3145at 3771.844 kb on + strand, within Shewana3_3145at 3771.864 kb on + strand, within Shewana3_3145at 3771.962 kb on - strand, within Shewana3_3145at 3772.018 kb on + strand, within Shewana3_3145at 3772.128 kb on + strand, within Shewana3_3145at 3772.157 kb on - strand, within Shewana3_3145at 3772.218 kb on + strand, within Shewana3_3145at 3772.325 kb on - strand, within Shewana3_3145at 3772.325 kb on - strand, within Shewana3_3145at 3772.391 kb on - strand, within Shewana3_3145at 3772.458 kb on + strand, within Shewana3_3145at 3772.641 kb on - strand, within Shewana3_3145at 3772.702 kb on - strand, within Shewana3_3145at 3772.825 kb on + strand, within Shewana3_3145at 3772.881 kb on + strand, within Shewana3_3145at 3772.938 kb on - strand, within Shewana3_3145at 3773.193 kb on - strand, within Shewana3_3145at 3773.350 kb on + strand, within Shewana3_3145at 3773.706 kb on - strandat 3773.920 kb on - strandat 3773.949 kb on - strandat 3773.996 kb on + strandat 3774.092 kb on + strandat 3774.278 kb on + strand, within Shewana3_3146at 3774.315 kb on + strand, within Shewana3_3146

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,770,386 - Shewana3_3144 0.62 +4.0
3,770,461 - Shewana3_3144 0.67 +5.3
3,770,471 - Shewana3_3144 0.68 +4.1
3,770,530 - Shewana3_3144 0.72 +3.9
3,770,631 + Shewana3_3144 0.79 +3.7
3,770,729 - Shewana3_3144 0.85 +3.4
3,770,806 + +3.8
3,770,814 - +3.5
3,770,901 + +3.8
3,770,909 - +1.6
3,770,989 - +3.8
3,771,097 - +3.3
3,771,097 - +2.7
3,771,158 + -0.7
3,771,161 - -0.5
3,771,206 - +1.9
3,771,328 + +1.0
3,771,351 - -0.4
3,771,367 + -0.8
3,771,524 - -4.3
3,771,529 - -3.8
3,771,539 + +0.2
3,771,618 - Shewana3_3145 0.10 +1.2
3,771,641 - Shewana3_3145 0.11 -1.3
3,771,746 - Shewana3_3145 0.16 +0.1
3,771,785 - Shewana3_3145 0.17 +0.1
3,771,816 + Shewana3_3145 0.19 -1.3
3,771,816 + Shewana3_3145 0.19 -1.6
3,771,834 + Shewana3_3145 0.19 -2.0
3,771,834 + Shewana3_3145 0.19 +0.4
3,771,842 - Shewana3_3145 0.20 +0.1
3,771,844 + Shewana3_3145 0.20 -1.5
3,771,864 + Shewana3_3145 0.21 -0.6
3,771,962 - Shewana3_3145 0.25 +1.1
3,772,018 + Shewana3_3145 0.27 -1.2
3,772,128 + Shewana3_3145 0.32 -0.2
3,772,157 - Shewana3_3145 0.33 +0.2
3,772,218 + Shewana3_3145 0.36 -1.3
3,772,325 - Shewana3_3145 0.40 +0.4
3,772,325 - Shewana3_3145 0.40 -1.7
3,772,391 - Shewana3_3145 0.43 +0.9
3,772,458 + Shewana3_3145 0.46 +0.4
3,772,641 - Shewana3_3145 0.53 +0.5
3,772,702 - Shewana3_3145 0.56 +0.1
3,772,825 + Shewana3_3145 0.61 -0.2
3,772,881 + Shewana3_3145 0.64 -2.2
3,772,938 - Shewana3_3145 0.66 -2.7
3,773,193 - Shewana3_3145 0.77 +0.2
3,773,350 + Shewana3_3145 0.83 +0.3
3,773,706 - +0.3
3,773,920 - -0.2
3,773,949 - +0.7
3,773,996 + +0.9
3,774,092 + -0.8
3,774,278 + Shewana3_3146 0.26 +0.8
3,774,315 + Shewana3_3146 0.30 +1.0

Or see this region's nucleotide sequence