Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2855 and Shewana3_2856 are separated by 132 nucleotides Shewana3_2856 and Shewana3_2857 are separated by 4 nucleotides Shewana3_2857 and Shewana3_2858 are separated by 53 nucleotides
Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866
_2855
Shewana3_2856: Shewana3_2856 - cyclic nucleotide-binding protein (RefSeq), at 3,415,999 to 3,416,607
_2856
Shewana3_2857: Shewana3_2857 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 3,416,612 to 3,417,238
_2857
Shewana3_2858: Shewana3_2858 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 3,417,292 to 3,418,305
_2858
Position (kb)
3416
3417
3418 Strain fitness (log2 ratio)
-2
-1
0
1 at 3415.849 kb on - strand at 3415.859 kb on - strand at 3415.875 kb on + strand at 3416.146 kb on - strand, within Shewana3_2856 at 3416.149 kb on - strand, within Shewana3_2856 at 3416.284 kb on - strand, within Shewana3_2856 at 3416.381 kb on + strand, within Shewana3_2856 at 3416.449 kb on - strand, within Shewana3_2856 at 3416.669 kb on + strand at 3416.716 kb on + strand, within Shewana3_2857 at 3416.828 kb on + strand, within Shewana3_2857 at 3416.908 kb on - strand, within Shewana3_2857 at 3417.007 kb on + strand, within Shewana3_2857 at 3417.053 kb on - strand, within Shewana3_2857 at 3417.074 kb on - strand, within Shewana3_2857 at 3417.086 kb on - strand, within Shewana3_2857 at 3417.090 kb on + strand, within Shewana3_2857 at 3417.231 kb on - strand at 3417.265 kb on - strand at 3417.769 kb on - strand, within Shewana3_2858 at 3417.945 kb on + strand, within Shewana3_2858 at 3418.163 kb on + strand, within Shewana3_2858 at 3418.219 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,415,849 - +0.6 3,415,859 - -0.9 3,415,875 + -0.0 3,416,146 - Shewana3_2856 0.24 +1.5 3,416,149 - Shewana3_2856 0.25 +1.1 3,416,284 - Shewana3_2856 0.47 +0.7 3,416,381 + Shewana3_2856 0.63 +1.2 3,416,449 - Shewana3_2856 0.74 -1.7 3,416,669 + -0.1 3,416,716 + Shewana3_2857 0.17 +0.2 3,416,828 + Shewana3_2857 0.34 +0.7 3,416,908 - Shewana3_2857 0.47 -2.2 3,417,007 + Shewana3_2857 0.63 +0.7 3,417,053 - Shewana3_2857 0.70 -0.2 3,417,074 - Shewana3_2857 0.74 -0.0 3,417,086 - Shewana3_2857 0.76 -1.9 3,417,090 + Shewana3_2857 0.76 +0.2 3,417,231 - +0.2 3,417,265 - -0.3 3,417,769 - Shewana3_2858 0.47 -1.5 3,417,945 + Shewana3_2858 0.64 +1.1 3,418,163 + Shewana3_2858 0.86 -0.0 3,418,219 - -1.5
Or see this region's nucleotide sequence