Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2851 and Shewana3_2852 are separated by 164 nucleotides Shewana3_2852 and Shewana3_2853 are separated by 124 nucleotides Shewana3_2853 and Shewana3_2854 are separated by 255 nucleotides Shewana3_2854 and Shewana3_2855 overlap by 4 nucleotides
Shewana3_2851: Shewana3_2851 - transport-associated (RefSeq), at 3,412,814 to 3,413,362
_2851
Shewana3_2852: Shewana3_2852 - hypothetical protein (RefSeq), at 3,413,527 to 3,413,937
_2852
Shewana3_2853: Shewana3_2853 - hypothetical protein (RefSeq), at 3,414,062 to 3,414,871
_2853
Shewana3_2854: Shewana3_2854 - hypothetical protein (RefSeq), at 3,415,127 to 3,415,369
_2854
Shewana3_2855: Shewana3_2855 - hypothetical protein (RefSeq), at 3,415,366 to 3,415,866
_2855
Position (kb)
3414
3415 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3413.249 kb on + strand, within Shewana3_2851 at 3413.299 kb on - strand, within Shewana3_2851 at 3413.373 kb on - strand at 3413.650 kb on - strand, within Shewana3_2852 at 3413.657 kb on - strand, within Shewana3_2852 at 3413.659 kb on + strand, within Shewana3_2852 at 3413.694 kb on + strand, within Shewana3_2852 at 3413.863 kb on + strand, within Shewana3_2852 at 3413.983 kb on - strand at 3414.053 kb on + strand at 3414.287 kb on + strand, within Shewana3_2853 at 3414.358 kb on - strand, within Shewana3_2853 at 3414.372 kb on - strand, within Shewana3_2853 at 3414.451 kb on - strand, within Shewana3_2853 at 3414.660 kb on - strand, within Shewana3_2853 at 3414.737 kb on + strand, within Shewana3_2853 at 3414.826 kb on + strand at 3414.845 kb on - strand at 3414.937 kb on - strand at 3414.962 kb on + strand at 3415.157 kb on + strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.324 kb on - strand, within Shewana3_2854 at 3415.479 kb on + strand, within Shewana3_2855 at 3415.849 kb on - strand at 3415.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,413,249 + Shewana3_2851 0.79 -0.7 3,413,299 - Shewana3_2851 0.88 -1.3 3,413,373 - +0.1 3,413,650 - Shewana3_2852 0.30 -1.0 3,413,657 - Shewana3_2852 0.32 -3.8 3,413,659 + Shewana3_2852 0.32 -0.2 3,413,694 + Shewana3_2852 0.41 -0.1 3,413,863 + Shewana3_2852 0.82 +0.3 3,413,983 - -0.3 3,414,053 + -0.0 3,414,287 + Shewana3_2853 0.28 -2.5 3,414,358 - Shewana3_2853 0.37 -0.5 3,414,372 - Shewana3_2853 0.38 +0.6 3,414,451 - Shewana3_2853 0.48 +0.5 3,414,660 - Shewana3_2853 0.74 -1.7 3,414,737 + Shewana3_2853 0.83 +0.0 3,414,826 + -1.1 3,414,845 - -1.7 3,414,937 - +0.3 3,414,962 + -1.3 3,415,157 + Shewana3_2854 0.12 -1.5 3,415,324 - Shewana3_2854 0.81 +1.6 3,415,324 - Shewana3_2854 0.81 +1.4 3,415,479 + Shewana3_2855 0.23 +0.3 3,415,849 - +0.6 3,415,859 - -0.9
Or see this region's nucleotide sequence