Experiment: L-Glutamine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2729 and Shewana3_2730 are separated by 79 nucleotides Shewana3_2730 and Shewana3_2731 are separated by 410 nucleotides Shewana3_2731 and Shewana3_2732 are separated by 127 nucleotides Shewana3_2732 and Shewana3_2733 are separated by 33 nucleotides
Shewana3_2729: Shewana3_2729 - hypothetical protein (RefSeq), at 3,259,609 to 3,260,208
_2729
Shewana3_2730: Shewana3_2730 - hypothetical protein (RefSeq), at 3,260,288 to 3,260,740
_2730
Shewana3_2731: Shewana3_2731 - transcriptional regulator PhoU (RefSeq), at 3,261,151 to 3,261,861
_2731
Shewana3_2732: Shewana3_2732 - phosphate ABC transporter, ATPase subunit (RefSeq), at 3,261,989 to 3,262,807
_2732
Shewana3_2733: Shewana3_2733 - phosphate ABC transporter, inner membrane subunit PstA (RefSeq), at 3,262,841 to 3,264,499
_2733
Position (kb)
3261
3262 Strain fitness (log2 ratio)
-2
-1
0
1 at 3260.247 kb on + strand at 3260.255 kb on - strand at 3260.905 kb on - strand at 3261.878 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3261.930 kb on - strand at 3262.169 kb on - strand, within Shewana3_2732 at 3262.599 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine (N) remove 3,260,247 + -1.1 3,260,255 - -0.6 3,260,905 - -1.3 3,261,878 - +0.5 3,261,930 - -1.8 3,261,930 - -0.0 3,261,930 - -0.1 3,262,169 - Shewana3_2732 0.22 -1.9 3,262,599 - -0.1
Or see this region's nucleotide sequence