Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2561

Experiment: L-Glutamine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2560 and Shewana3_2561 are separated by 9 nucleotidesShewana3_2561 and rpmF are separated by 15 nucleotidesrpmF and Shewana3_2563 are separated by 17 nucleotides Shewana3_2560: Shewana3_2560 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 3,062,171 to 3,063,130 _2560 Shewana3_2561: Shewana3_2561 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 3,063,140 to 3,064,168 _2561 Shewana3_2562: rpmF - 50S ribosomal protein L32 (RefSeq), at 3,064,184 to 3,064,354 rpmF Shewana3_2563: Shewana3_2563 - hypothetical protein (RefSeq), at 3,064,372 to 3,064,896 _2563 Position (kb) 3063 3064 3065Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3062.309 kb on - strand, within Shewana3_2560at 3062.652 kb on - strand, within Shewana3_2560at 3062.696 kb on - strandat 3062.785 kb on - strand, within Shewana3_2560at 3062.955 kb on - strand, within Shewana3_2560at 3063.091 kb on - strandat 3065.041 kb on + strandat 3065.041 kb on + strandat 3065.069 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
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3,062,309 - Shewana3_2560 0.14 -3.8
3,062,652 - Shewana3_2560 0.50 -2.1
3,062,696 - -1.1
3,062,785 - Shewana3_2560 0.64 -3.2
3,062,955 - Shewana3_2560 0.82 -3.7
3,063,091 - -4.9
3,065,041 + -1.1
3,065,041 + +1.1
3,065,069 + +0.7

Or see this region's nucleotide sequence